Basic Information

Insect: Apamea anceps
Gene Symbol: -
Assembly: GCA_951799955.1
Location: OX637525.1:14299453-14307893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00024 0.021 16.1 4.9 2 23 244 265 243 265 0.96

2 13 0.21 18 6.9 1.8 2 23 269 290 268 290 0.97

3 13 0.00071 0.06 14.7 1.0 2 23 376 398 375 398 0.96

4 13 0.00026 0.022 16.0 1.2 1 23 404 427 404 427 0.98

5 13 0.073 6.2 8.3 0.1 1 20 431 450 431 452 0.93

6 13 0.00012 0.01 17.1 0.4 1 23 460 483 460 483 0.96

7 13 0.91 77 4.9 1.0 1 23 488 511 488 511 0.85

8 13 0.00023 0.019 16.2 0.1 2 23 524 545 523 545 0.97

9 13 0.0077 0.65 11.4 1.6 1 23 551 573 551 573 0.98

10 13 0.21 18 6.9 1.9 2 23 579 599 579 599 0.96

11 13 0.0003 0.025 15.8 1.0 2 23 605 626 605 626 0.97

12 13 0.07 5.9 8.4 0.2 3 23 632 651 631 651 0.97

13 13 8.8 7.4e+02 1.8 4.4 2 23 670 691 669 692 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00024	0.021	16.1	4.9	2	23	244	265	243	265	0.96
2	13	0.21	18	6.9	1.8	2	23	269	290	268	290	0.97
3	13	0.00071	0.06	14.7	1.0	2	23	376	398	375	398	0.96
4	13	0.00026	0.022	16.0	1.2	1	23	404	427	404	427	0.98
5	13	0.073	6.2	8.3	0.1	1	20	431	450	431	452	0.93
6	13	0.00012	0.01	17.1	0.4	1	23	460	483	460	483	0.96
7	13	0.91	77	4.9	1.0	1	23	488	511	488	511	0.85
8	13	0.00023	0.019	16.2	0.1	2	23	524	545	523	545	0.97
9	13	0.0077	0.65	11.4	1.6	1	23	551	573	551	573	0.98
10	13	0.21	18	6.9	1.9	2	23	579	599	579	599	0.96
11	13	0.0003	0.025	15.8	1.0	2	23	605	626	605	626	0.97
12	13	0.07	5.9	8.4	0.2	3	23	632	651	631	651	0.97
13	13	8.8	7.4e+02	1.8	4.4	2	23	670	691	669	692	0.93

Sequence Information

Coding Sequence: ATGGTCGAGAGCGGGAGCGCATGGGACTGGGTTGTCTCCTTTTGCGAGGATGTTATATCTGCAAAGAAGGCGGCCGAGCGGGAGAGAGAAGCCGCATCCTCTCCTCTCCCGCAGGAGACGCACCGGACGCCCAAGAAGGGTCTTGAAAATATGGACAGTTTCAAGTCGAAACTCAAAAATGTCCTTCAAAGTACAAAGTTTTGTGGGATATGCTTGGAAAGTGACGATAATATGAGCACCATTAACGAAACCCTGGAGGTCATTGTGTATGAACAGGCCCGCACGAAAGCTTTGAAGGCTATCATTGATGTAGTGTTTATAGAGACTAATTACAACCTAGCAAGTTCACTCATATGCAACAGTTGTATCGAAAAACTGATCCAGTCATACATCTTCATAGAAAATGCGAAGAAAACATTCAAGATTTTAGACAACTATGTCAACGATTTGTTTAGCAAATCAGATGATATTTTCAATCATTTTCCGGAGTCCAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATGTCCACGATTCTCTTGAAAACGGGAAAAGAAAAGATGAGTTTAACAAAATTGAggaagaaaataatgaaatctTTAAGGTGAAAAAAGAATATGCTTCAAAAAGAAAGAGAATCAACTGTGCAAAATGTCTGGTAACGCTACCCTCGCTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACTGTGTTCtaagacatttaaaaataaacaacatttaaatgtaCATTACAAACTGCATTTAAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCATAAAAAGGAATTAATGGACCATCTTAAAACTAACCATGGAGATTCGTTACTCAAATGTTTGAAATGTGAATTGTTTTACTCCTTAAAAACTTATCAAATCCACACCAAAGTCTGCcaacaaataaaagaagaacAATCTCAATGCTTAATGTGCCTTAAAACTTATACTGAAAAAGAATGCAAGTCCCATAACTGCAGGTACAGCTGCCCAGAATGTACCGAAGTACCTTGCATGCATTATAAGTATTTGAAGTCTTATCGGGAACAGACTTCAAACAACACAGACAAGACCAAATGTGTTGACTGCGACTATGTGTGTACTACAAAAGAGAATTTACTCGGACATGTGAATAAGGACCATTTAAACAATCATCCATATACCTGTGATAAATGTGGACAACAATTTTATTCTAAACTAGTTTTAAAAGCTCATATTAACAGGTTCCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATATAGTAATATTAACAATTACGAAAGCCATGTAATATCTTGTGAGGATGTCAAAAGGAAGTTTGCTTGTGACAACTGTCCAGCCTCTTTTGATTCCAATGACAGTTTGACGAACCATACACAACGTAGACATAGCACAGATATTTTTCCATGTGGGCTTTGCAATAAAAAGTTCCTAAAAGACTCTAAAAGGAAAGAGCATATGGTTAAAGTACATAGCAGTCTCCGAATTAAGAAGAAGGATAAAAATATAGAATGTGTTGTGTGTCAAGAAAAGTTTGATAACAAAGGAGAATTGGTACTGCATATGAAATCTCATGGTCCACATACTACATATCCATGCAGGATATGCAATACAGAGTATCAGACTTTGAGACAGTTTCGGGCACATAATCGCAAACACAACGGACCATTTGCAACATGCCACGTTTGTGGTAAAGAAATGAGAGAAATTCTACTTAAAAAACATCTGACTACCCATTCAGATGCTGTAGAGACGTGTGAGACTTGTGGCAGATCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCATCTAGAAAGTGTTGCATGTCCTAAGTGTAAGAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGGCATATCATGGAAGAGAATCCTGCTCAAAAAGGAATTAGGAAACAACAACCAAACTTGAAATGTGAACAATGTGACTATAAGACTTGGAACAACACACTTCTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATACGTCTGCATACGTCTGCCACATATGCAGCAAAGACTTCATAGGAAAACATTTACTGAAAAAGCATATTGA
Protein Sequence: MVESGSAWDWVVSFCEDVISAKKAAEREREAASSPLPQETHRTPKKGLENMDSFKSKLKNVLQSTKFCGICLESDDNMSTINETLEVIVYEQARTKALKAIIDVVFIETNYNLASSLICNSCIEKLIQSYIFIENAKKTFKILDNYVNDLFSKSDDIFNHFPESSIESTNVVIVLENNVHDSLENGKRKDEFNKIEEENNEIFKVKKEYASKRKRINCAKCLVTLPSLRALKMHRMKCKKQILRCRLCSKTFKNKQHLNVHYKLHLKVKCKFCPEILHKKELMDHLKTNHGDSLLKCLKCELFYSLKTYQIHTKVCQQIKEEQSQCLMCLKTYTEKECKSHNCRYSCPECTEVPCMHYKYLKSYREQTSNNTDKTKCVDCDYVCTTKENLLGHVNKDHLNNHPYTCDKCGQQFYSKLVLKAHINRFHENCFVCQYCDSEYSNINNYESHVISCEDVKRKFACDNCPASFDSNDSLTNHTQRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLRIKKKDKNIECVVCQEKFDNKGELVLHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDAVETCETCGRSFQNITLLKYHQKVHLESVACPKCKKMINPARLRRHWRGHIMEENPAQKGIRKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCIRLPHMQQRLHRKTFTEKAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01119684;
90% Identity: iTF_00124579;
80% Identity: -