Acre030089.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451378.1:1520347-1525449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00091 0.082 14.4 5.3 2 23 299 320 298 320 0.96 2 17 0.17 16 7.2 0.5 2 23 324 345 323 345 0.96 3 17 5.4 4.9e+02 2.5 3.1 2 21 380 398 379 399 0.89 4 17 0.00079 0.072 14.6 1.1 2 23 431 453 430 453 0.96 5 17 0.00012 0.011 17.1 0.8 1 23 459 482 459 482 0.97 6 17 0.098 8.9 8.0 0.1 1 20 486 505 486 507 0.93 7 17 0.00037 0.034 15.6 0.4 1 23 515 538 515 538 0.96 8 17 1.2 1.1e+02 4.5 1.0 1 23 543 566 543 566 0.85 9 17 0.00015 0.014 16.8 0.2 2 23 578 599 577 599 0.97 10 17 0.01 0.94 11.0 1.6 1 23 605 627 605 627 0.98 11 17 0.29 26 6.5 1.9 2 23 633 653 633 653 0.96 12 17 0.0004 0.037 15.5 1.0 2 23 659 680 659 680 0.97 13 17 0.045 4.1 9.0 0.2 2 23 685 705 684 705 0.96 14 17 3.6e-05 0.0033 18.8 3.1 1 23 752 774 752 774 0.98 15 17 0.0015 0.14 13.7 1.4 2 23 780 801 779 801 0.96 16 17 0.066 6 8.5 0.8 1 23 807 830 807 830 0.93 17 17 0.0029 0.26 12.8 0.4 1 23 835 858 835 858 0.96
Sequence Information
- Coding Sequence
- ATGAGGAAGGCATTTCGGTATCACGGGGTGCCGAACTACTTTCGCCGCCCTGTCGGAGCCTACTTGGCGGACAGGTGTGTCGTCTACCCGGGTCGACAAGCCGACCCCGAAGAGGTGTCGTGTGTTGTTCCGCAGGGGTCGGTACTGGGGCCTCTCCTGTGGAATATCGGATACGGCTGGGTGCTGCGTGATGAGCTCCACCATGGCGTTAGCGTTACCTGCTACGCCGACGACCCGCTGGTGACAGCGCGGGGGAGTACATATAAAGATGCAGCACAACTCTGCGACAGCAGGAGTTGCGCAGGTCTTGAAAATATGGACAGTTTCAAGTCGAAACTCAAAAATGTCCTCCAAAGTACAAAGTTTTGTGGGATATGCTTGGAAAGTGACGATAATATGAGCACCATTAACGAAACCCTGGAGGTTATTGTATATGAACAGGCCCGCACGAAAGCTTTGAAGGCTATCATTGATGTAGTGTTTCTAAAGACTAATTACAGCCTAGCAAGTTCACTCATATGCAACAGTTGTATCGAAAAACTGATTCAGTCATACATTTTCATAGAAAATGCGAAGAAAACATTCAAGATTTTAGACAACTATGTCAACGACTTGTTTAGCAAATCAGATGATATTTTCTATCATTTGCCGGACTCCAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATATCCATGATTCTCTTGAAAACGGGAAAAGAAAAGATGAGTTTAACAAAATTGAGGAAGAAAATAATGAAACCTTTAAGGTGAAAAAAGAATTTTCTCCCAAAAGAAAGAGAATCCACTGTGCAAAATGTCTGATAACGCAACCCTCGCTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACTGTGTTttaagacatttaaaaataaacaacatttaaaTGTACATTACAAACTGCATATAAAAGTGAAATGCAAATTTTGTCctgaaatacttaataaaaaggaACTACTGGAGCATCTTAAAACTTACCATGGAGATTCTATACTCAAATGTTTGAAATGTGAATTGTTTTACTCCTTAAAAACTTATCAAACCCACACGAAAGTCTGCCAACAAATAAAAGAAGAACAATCTCAATGCTTAATGTGCCTTAAAACTTTTACTGAAAAAGAATTCAAGTCCCATACCTGCAGGTACAGCTGCCCAGAATGTACCGAAGTACCTTGCAAGCATTATAAGTATTTGAAGTCTTATCGGGAACAGACTTTAAACAACACGGACAAGACCAAATGTGTTGACTGCGACTATGTGTGTACTAGAAAAGAGAATCTACTCGGACATGTGAATAAGGAGCATTTAAACAATCATCCATATACTTGTGATAAATGTGGACAACAGTTTTATTCTAAAGTAGTTTTAAAAGCTCATATTCTCAGGTTCCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATATAGTAATATTAACAATTACGAAAGCCATGTAATATCTTGTGAGGATATCAAAAGGAAGTTTGCTTGTGACAACTGTCCAGCATCTTTCGATTCCTCTGAAAGTTTGACTAACCATAAACAACGTAGACATAGCACAGATATTTTTCCATGTGGGCTTTGCAATAAAAAGTTCCTAAAAGACTCTAAAAGGAAAGAGCATATGGTTAAAGTACATAGCAGTCTCCGAATTAAGAAGGATAAAAATATGGAATGTGTTGTGTGTCAAGAAAAGTTTGATAACAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCGCACACTACATATCCATGCAGGATATGCAATACAGAGTATCAGACTTTGAGACAGTTTCGGGCACATAATCGCAAACACAACGGACCGTTTGCAACATGCCATGTTTGTGGTAAAGAAATGAGAGAAATCCTACTGAAAAAACATCTGACTACCCACTCAGATGCTGTAGAGACATGTGAGACTTGTGGCAGATCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCATCTAGAAAGTGTTGAATGTCCTAAGTGTAAGAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGGCATATCATGGAAGAGAATCCGGCTCAAAAAGGAATTAGAAAACAACAACCAAACTTAAAATGTGAACAATGTGACTATAAGACATGGAACAACACACTTCTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATACGTCTGCCACATATGCAGCAAAGACTTCATAGGAAAACATTTACTGAAAAAGCATATTGAAACACATGACATGAAAAGCGTTGTCTGTATGGTGTGTCTGAAGAGTTTTGCCAATTCGACTTGCTTGAAAATGCATTTGCGGTTACACACAGGTGAGAAGCCTTTCACTTGTGAAATATGTGGGGACCGATTCCGGTCATCCAGCATTATGAATGTACACAAATTAAAGAAGCATTCTGGTAAGAGTTATATTTGCCCTTTGTGTTCAAATAAGTTTTATACTGTAAGGGATTTGCGAAGACATGTGATTAAAGTCCATTGGAAGCAGAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGATAAAGAACATTATCACTTGTTTCATGATGGTAGAAGAGTTAAAGTGGCTGACGAAGATGTTGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MRKAFRYHGVPNYFRRPVGAYLADRCVVYPGRQADPEEVSCVVPQGSVLGPLLWNIGYGWVLRDELHHGVSVTCYADDPLVTARGSTYKDAAQLCDSRSCAGLENMDSFKSKLKNVLQSTKFCGICLESDDNMSTINETLEVIVYEQARTKALKAIIDVVFLKTNYSLASSLICNSCIEKLIQSYIFIENAKKTFKILDNYVNDLFSKSDDIFYHLPDSSIESTNVVIVLENNIHDSLENGKRKDEFNKIEEENNETFKVKKEFSPKRKRIHCAKCLITQPSLRALKMHRMKCKKQILRCRLCFKTFKNKQHLNVHYKLHIKVKCKFCPEILNKKELLEHLKTYHGDSILKCLKCELFYSLKTYQTHTKVCQQIKEEQSQCLMCLKTFTEKEFKSHTCRYSCPECTEVPCKHYKYLKSYREQTLNNTDKTKCVDCDYVCTRKENLLGHVNKEHLNNHPYTCDKCGQQFYSKVVLKAHILRFHENCFVCQYCDSEYSNINNYESHVISCEDIKRKFACDNCPASFDSSESLTNHKQRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLRIKKDKNMECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDAVETCETCGRSFQNITLLKYHQKVHLESVECPKCKKMINPARLRRHWRGHIMEENPAQKGIRKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00925160; iTF_01094369; iTF_00123658; iTF_01093420; iTF_01095244; iTF_00071790; iTF_00667832; iTF_01340524;
- 80% Identity
- -