Doo016393.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411735.1:19873256-19880289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.2 1.1e+03 1.5 0.1 1 21 292 312 292 313 0.92 2 17 0.0006 0.073 14.6 1.7 2 23 320 341 319 341 0.95 3 17 2 2.5e+02 3.5 3.3 2 23 345 366 344 366 0.96 4 17 0.00065 0.079 14.5 1.2 2 23 453 475 452 475 0.96 5 17 1.2e-05 0.0015 20.0 0.7 1 23 481 504 481 504 0.97 6 17 0.081 9.9 7.9 0.2 1 20 508 527 508 529 0.93 7 17 8.5e-05 0.01 17.3 0.2 1 23 537 560 537 560 0.96 8 17 0.48 58 5.5 1.0 1 23 565 588 565 588 0.91 9 17 0.00011 0.013 16.9 0.1 2 23 601 622 600 622 0.97 10 17 0.0085 1 11.0 1.6 1 23 628 650 628 650 0.98 11 17 0.39 47 5.8 2.4 2 23 656 676 656 676 0.96 12 17 0.0003 0.037 15.6 1.0 2 23 682 703 682 703 0.97 13 17 0.046 5.6 8.7 0.1 2 23 708 728 707 728 0.95 14 17 2.9e-05 0.0036 18.7 3.1 1 23 775 797 775 797 0.98 15 17 0.0012 0.15 13.6 1.4 2 23 803 824 802 824 0.96 16 17 0.054 6.5 8.5 0.8 1 23 830 853 830 853 0.93 17 17 0.0023 0.29 12.8 0.4 1 23 858 881 858 881 0.96
Sequence Information
- Coding Sequence
- ATGCCGAAAGCGATTAAAAGTGATGCTCGAAACGTTATTCTAAAGGTTAAAACCTTTTTGAAGAAGAAGCTCGGGCGGAGTCTGCGATTACTCCATTTAATCAAATATACAAACGAATTTCGGCAACGACAGGAAGGGCACGCAGCAGAACAAACTGGTACAAAAATTCGGACACCAGGCAAGGAGAGAAAACGTAAAAGTGGATTTGTGCATGTTGATGATTTTCACATGGGAGTTATACGGAGGAAAGTACATGAATTTTATTCTGCTAAAAAAGATATCCCTACTGTTAAAAAGCTTCTAGAGGTCTTAAATACAAATAAATTACACAGGATAGAGAGAGAGTCTGCGAAAGCTGCTTCACAAGGTCTTGAAAAGATGGACAGTTTCAAGTTGAAGCTCAAAAATGTCCTTCACAGTACAAAGTATTGTGGGATATGCTTGGAAAGTGACGATAATATGAGCACCATTAACGAAAATCTGGAGATAATTGTGAATGAACAGATTCGCACGAAAGCTTTGAAGGCTATAATTAATGTAGTGTTTATAGAGACTAATTACAGCCTAGCATGTTCACTCATATGTAACAGTTGTGTGGAAAAACTGATTCAGTCATACATTTTCATAGAAAATGCGAAGGAAACATATAAGCTTTTAGACAGCTATGTGAGCAATTTATTTAGCAAATCAGATGATATTTTCAATCATTTGCCGGAGTCAAGTATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATAATGATGGTTCTCTTAAAAAAAGGGAAAGAAAAGATGAGTTTAGCATGATGGCGGAAGAAAATAATAAAATCTTGGAAGTGAAACAAGAATTGACTCCAAAAGGAAAGAAATTCAAATGTGTGAACTGTCTAGTATATCTACCCTCACTCAGAGCGTTAAAGATGCATATAATGAAATGTAAGAAACAGATGTTACAATGTAGACTATGTTTTAAGACATTTAAAAATAAACAACTTTTAAATGTACATTACGAACTGCATTTGAAAGTGAAATGCAAATTTTGTCCTCAAATACTTCATAAAAAGAAATTACTGGACCATCTTAAAACTAAACATGGAGATTCTTTACTAAAATGTTTGAAATGTGAACTGTTTTACTCCATAAAAACTTATCAAACTCACACTAAAGTCTGCCAACAAACAAAAGAAAAAAACCCTCGAAAATGCTTGATGTGCCTAAAGACCTATACTGAAAAAGAATTCAAGTCCCATAACTGCAAGTACAGCTGCCCAGAATGTACCGAAATACCTTGCATGCATTATAAGTATTTGAAGTCTTATAGGGAACAGGCTTTAAACAACGCATACAAGACCAAATGTGTTGACTGTGACTATGTTTGTACAAGAAAAGAAAATTTACTTGGACATGTGAATAAGGATCATTTAAACAATCATCCATATACTTGTGATAAATGTGGACAACAGTTTTATTCTAAAGTAGCTTTAAAAGCTCACATTCTTAGGTTCCATGAAAACTGTTTCGTGTGCCAGTTTTGTGATTCAGAATTTAGTAATATTAACAATTACGAAAGTCATGTAATATCCTGTGAGGATATCAAAAGGAAGTTTGCTTGTGACAATTGTCCAGCCTCTTTTGACTCCTCTGTCAGTTTGACGAACCATATAAAACGTAGACATAGCACAGATATTTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGAAAAGAGCATATGATTAAAGTGCATAGTAGTCTCAAAATTAAGAATAGGAATAAAAATATAGAATGTGTTGTGTGTCAAGAGAAGTTTGATAATAAAGGAGAATTGGTGCAGCATATGAAATCCCATGGTCCACATACTACGTATCCATGCAGAATATGTAATACAGAGTATCAGACTCTGAGACAGTTTCGGGCACATAATCGCAAACACAATGGACCATTTGCTACTTGTCATGTTTGTGGTAAACAAATGAGAGAAATCCTACTAAAAAAACATCTGACTACCCACTCAGATTCTGTAGAAACATGCGAGACTTGTGGCAGGTCTTTTCAAAACGTCACTCTATTAAAATACCACCAGAAAGTTCATTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTACGGCGGCATTGGAGAGGGCATCTAATGGAAGAGAATCCTGCTCAAAAAGGAGTTAGGAAACAACAGCCAAACTTGAAATGTGAACTATGTGAGTATAAGACATGGAACAACACACTTCTAGAATGTCATATGAATCGCCATCATTTGAAAATAAAGCCATACGTCTGCCATATATGCAGCAAAGACTTCATAGGAAAACATTTGCTGAAAAAGCATATTGAAACGCATGACATGAAAAGTGTTGTCTGCATGGTGTGCTTGAAGAGTTTTGCCAACTCGACTTGCTTGAAAATGCATTTGCGTCTACACACTGGTGAAAAGCCTTTCACTTGTGAAATATGCGGGGACCGATTTCGGTCATCGAGTATTATGAATGTACACAAGTTAAAAAAGCATTCCGGCAAGAGTTATATTTGTCCGTTATGTTCAAATAAGTTTTATACTGTAAGAGATTTGCGAAGACATGTGATTAAAGTGCATTGGAAGCAGAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGATAAAGAACATTATCATTTGTTTCATGACGGTAGAAGAGTTAAAATTGCTGATGAAGATGTCGATTTTTATTTGCCTTGTTGA
- Protein Sequence
- MPKAIKSDARNVILKVKTFLKKKLGRSLRLLHLIKYTNEFRQRQEGHAAEQTGTKIRTPGKERKRKSGFVHVDDFHMGVIRRKVHEFYSAKKDIPTVKKLLEVLNTNKLHRIERESAKAASQGLEKMDSFKLKLKNVLHSTKYCGICLESDDNMSTINENLEIIVNEQIRTKALKAIINVVFIETNYSLACSLICNSCVEKLIQSYIFIENAKETYKLLDSYVSNLFSKSDDIFNHLPESSIESTNVVIVLENNNDGSLKKRERKDEFSMMAEENNKILEVKQELTPKGKKFKCVNCLVYLPSLRALKMHIMKCKKQMLQCRLCFKTFKNKQLLNVHYELHLKVKCKFCPQILHKKKLLDHLKTKHGDSLLKCLKCELFYSIKTYQTHTKVCQQTKEKNPRKCLMCLKTYTEKEFKSHNCKYSCPECTEIPCMHYKYLKSYREQALNNAYKTKCVDCDYVCTRKENLLGHVNKDHLNNHPYTCDKCGQQFYSKVALKAHILRFHENCFVCQFCDSEFSNINNYESHVISCEDIKRKFACDNCPASFDSSVSLTNHIKRRHSTDIFPCGLCNKKFLKDSKRKEHMIKVHSSLKIKNRNKNIECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCETCGRSFQNVTLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPAQKGVRKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKIADEDVDFYLPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -