Aocu007585.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000056.1:3375086-3378333[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.016 16.0 4.9 2 23 194 215 193 215 0.96 2 17 0.26 21 6.2 1.7 2 23 219 240 218 240 0.97 3 17 6.8 5.5e+02 1.7 1.0 2 21 246 264 245 265 0.88 4 17 0.00049 0.04 14.7 1.2 2 23 326 348 325 348 0.96 5 17 0.00011 0.0085 16.8 0.9 1 23 354 377 354 377 0.97 6 17 0.013 1.1 10.2 0.1 1 20 381 400 381 402 0.93 7 17 0.0011 0.091 13.6 3.0 1 21 410 430 410 433 0.94 8 17 0.76 61 4.7 1.0 1 23 438 461 438 461 0.85 9 17 8.4e-05 0.0067 17.2 0.1 2 23 474 495 473 495 0.97 10 17 0.0052 0.42 11.5 1.6 1 23 501 523 501 523 0.98 11 17 0.18 14 6.7 1.9 2 23 529 549 529 549 0.96 12 17 0.00025 0.02 15.7 1.0 2 23 555 576 555 576 0.97 13 17 0.035 2.8 8.9 0.1 2 23 581 601 580 601 0.95 14 17 2.2e-05 0.0018 19.0 3.1 1 23 648 670 648 670 0.98 15 17 0.0032 0.25 12.2 2.3 3 23 677 697 676 697 0.97 16 17 0.074 5.9 7.9 0.8 1 23 703 726 703 726 0.93 17 17 0.0018 0.14 13.0 0.4 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAAGTCGAAACTCAAAAATGTCCTTCACAGTACAAAGTATTGCGGGATATGCTTGGAAAGTGAGGATAATATGAGCACCATTAACGAAAACCTGGAGGTCATTGTGAATGAACGGACTTGCACAAAAACTTTGAAGGCTATCATTGATGTAGTGTTTATAGAGATTAATTACAGTCTAGCAAGTTCACTCATATGCAACAGTTGTATGGAAAAACTGATTCAGTCATACATTTTCACAGAAAATGCAAAGAAAACATTCAAGATTTTAGACAACTATGTCAACGACTTGTTTAGCAAATCAGATGATATTTCCAATCATTTGTCGGAGTCAAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATATTGATGATTCTCCTGAAAACGGGGAAGGAAAAGATGAGTTCAACAACGATGCTGAAGAAAATAATGAAATCTTTAAGGTTAAAAAAGAACTTGCTCCAACAAGAAAGAGAATCAAATGTGCAAAATGTCTGGTATTGCTACCCTCGCTCAGAGCTTTAAAGATGCATAGAATTAAATGTAAGAAGCAGATATTAAGATGTAGACTATGTTCAAAGACATTTAAAAATAAACAACATTTAAATGTACATTACAAACTGCATTTGAAAGTGAAATGCAAATTTTGCCCTGAAATACTTCATAAAAAAGAATTACTGGAACATCTTAAAACTAACCATGGAGATTCTTTACTCAAATGCTTAAAATGTAAACTGTTTTACTCCTTAAAAACTTTTCAAGCCCACACTAAAGTCTGCAAACAAATAAAAGAAGAAGAACCTCAATGCTTGATGTGCCTTAAGACCTATACTGAAAAAGAATTCAAGTCCCATACCTGCAGGTACAGTTGCCCAGAATGTACCGAAATACCTTGCATGCATTATAAGTATTTGAAGTCTTATCGGGAACAGACTTTAAACAACGCAGACAAGACCAAATGTGTTGATTGTGACTATGTGTGTACAAGGAAAGAAAATCTACTTGGACATGTGAATAAGGACCATTTAAACAATCATCCATATACCTGTGATAAATGTGGACAAGAGTTTTATTCTAAAGTCGTTTTAAAATCTCATATTCTTAGGTTCCATGAGAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTTAGTAATATTAACAATTACGAAAGTCATGTAATATCATGTGAGGATATCAAAAGGAAGTTTGTTTGTGACAATTGTCCAGCCTCTTTCGATTCCTCTGACCATTTGACGAACCATAGACAATGTAGACATAGCATGGATATTTTTCCATGTGGGCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGGAAAGAGCATATGGTTAAAGTACACAGCAGTCTTCAAATTAAGAAGAGGGATAAAAATATAGAATGTGTTGTGTGTCAAGAAAAGTTTGATAACAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCACACACTACATATCCGTGCAGGATATGCAATACAGAGTATCAGACTTTGAGGCAGTTTCGAGCACATAGTCGCAAACACAACGGACCATTTGCAACATGCCATGTTTGTGGTAAAGAAATGAGAGAAATCCTACTGAAAAAACATCTGACTACCCACTCAGATGCTATAGAAACATGTGAAACATGTGGCAGGTCTTTTCAAAACATTACTTTATTGAAGTACCACCAGAAAGTCCATCTAGAAAGTGTCCCATGTCCTAAGTGTAAAAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGACATCTAATGGAAGAGGACCCTACCCAAAAAGGAGTTAGGAAACAACAACCAAACTTGAAATGTGACCTATGTGAATATAAGACATGGAACAACACCCTTCTAGAATGTCATATGAACCGCCATCACTTGAAAATAAAGCCATACGTCTGCCACATATGCAGCAAAGACTTTATAGGAAAACATTTGCTGAAAAAGCATATTGAAACGCATGACATGAAAAGTGTTGACTGTATGGTGTGCCTGAAGAGTTTTGCCAATTCGACTTGCTTGAAAATGCATTTGCGGCTACACACAGGTGAGAAGCCTTTTACTTGTGAAGTATGTGGGGACCGATTCCGGTCATCAAGCATTATGAATGTGCACAAGTTAAAGAAGCATTCTGGCAAGAGTTACATTTGCCCGTTGTGTTCAAATAAGTTTTATACTGTAAGGGACTTGCGAAGACATGTGATTAAGGTGCATTGGAAGCAGAAAAATAAGAGGTTTGACCCGCGAGAGTTGAAAGGGCTGGATAAAGAACATTATCATTTGTTTCATGATGGTAGAAGAGTTAAAGTTGCTGATGAAGATGTTGATTTTTATATGCCCTGTTAA
- Protein Sequence
- MDSFKSKLKNVLHSTKYCGICLESEDNMSTINENLEVIVNERTCTKTLKAIIDVVFIEINYSLASSLICNSCMEKLIQSYIFTENAKKTFKILDNYVNDLFSKSDDISNHLSESSIESTNVVIVLENNIDDSPENGEGKDEFNNDAEENNEIFKVKKELAPTRKRIKCAKCLVLLPSLRALKMHRIKCKKQILRCRLCSKTFKNKQHLNVHYKLHLKVKCKFCPEILHKKELLEHLKTNHGDSLLKCLKCKLFYSLKTFQAHTKVCKQIKEEEPQCLMCLKTYTEKEFKSHTCRYSCPECTEIPCMHYKYLKSYREQTLNNADKTKCVDCDYVCTRKENLLGHVNKDHLNNHPYTCDKCGQEFYSKVVLKSHILRFHENCFVCQYCDSEFSNINNYESHVISCEDIKRKFVCDNCPASFDSSDHLTNHRQCRHSMDIFPCGLCNKKFLKDSKRKEHMVKVHSSLQIKKRDKNIECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHSRKHNGPFATCHVCGKEMREILLKKHLTTHSDAIETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEEDPTQKGVRKQQPNLKCDLCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVDCMVCLKSFANSTCLKMHLRLHTGEKPFTCEVCGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00122735;
- 80% Identity
- -