Xxan062456.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990668.1:18941038-18944510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 4e+02 3.8 2.7 1 20 157 176 157 178 0.93 2 20 0.0012 0.23 13.9 4.7 2 23 185 206 184 206 0.97 3 20 0.027 5.5 9.6 6.5 2 23 210 231 209 231 0.97 4 20 5.3 1.1e+03 2.4 1.1 2 21 237 255 236 256 0.88 5 20 7.8 1.6e+03 1.9 2.0 2 21 266 284 266 285 0.92 6 20 0.78 1.6e+02 5.1 0.8 2 23 317 339 317 339 0.91 7 20 0.0019 0.38 13.3 3.4 1 23 345 368 345 368 0.97 8 20 2.9 5.8e+02 3.2 0.6 1 12 372 383 372 385 0.89 9 20 0.0001 0.02 17.3 0.3 1 23 401 424 401 424 0.96 10 20 1.6 3.2e+02 4.1 0.8 1 23 429 452 429 452 0.85 11 20 0.00029 0.059 15.8 0.1 2 23 465 486 464 486 0.97 12 20 0.15 30 7.3 1.3 1 23 492 514 492 514 0.98 13 20 0.12 24 7.6 2.4 2 23 520 540 520 540 0.97 14 20 0.0011 0.21 14.1 2.5 2 23 546 567 546 567 0.97 15 20 0.046 9.2 8.9 0.1 2 23 572 592 571 592 0.95 16 20 9.6 1.9e+03 1.6 4.4 2 23 611 632 610 633 0.93 17 20 2.9e-05 0.0059 19.0 3.0 1 23 639 661 639 661 0.98 18 20 0.0041 0.82 12.2 2.3 3 23 668 688 667 688 0.97 19 20 0.053 11 8.7 0.8 1 23 694 717 694 717 0.93 20 20 0.023 4.6 9.9 0.3 3 23 724 745 723 745 0.95
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAAATTGAAGCTCAAAAATGTCCTGCACAGCACAAAGTATTGTGGAATATGCTTGGAAAGTGACGATAATATGAGCACCATTGACGAAGATCTGGAGATCGTTGTGAATGAACGGACTTGCACGAAAGCTTTGAAAGCTATCATCGATGTAGTGTTTAGAGAGgctAATTACAGTCTAGCAAGTACACACATATGCAACAGTTGTATGGAAAAATTGATGCAGTCATAcatttttatagaaaattaTAAAGAAACATTAACAATACTCGACAACTATGTCAATGATTTGTTTGGTAAATCAGATGATATTTTTAATCATTTGCCAGAATCAAATAATGAAAGTACAAATGTGGTCATTGTATTAGAAAATATCCATGATTCtcctgagaaaaaaaaaatgaaagaagaaaatgaaagctttgaagtaaaaaaagaattcaccccaaaaagaaataaattcaaGTGTGTGAAATGTCACTTATTATTCCCATCACACAGAGTATTAAAACAGCATAGTAATAAATGTAAGAATCCAAAATTACGATGCAAAGTATGTTTtagaacatttaaaaataaacaacatatTAATGCACATTACCGACAACATTTGAAAGTGAAATGCAAGTTTTGTCATAAACAGTTTCACAAAAAAGAATTATTGGAACATATTAAAACAAACCATGAAGAACACTCACTCAAATGTTTGAAATGTAAACAATTTTACTCTGTAGAGACTTTTCAAAGGCATACTAAAGTTTGCCAAGACACAAAGGAAGAAAAACCTCAGTGTTTGATGTGTCTGAAGAGATACACTGAAGAAGAGTTAAAGTCCCATACATGCAAATATAGCTGCCCAGAATGTACTGAAATACCTTGCATGCATTATAAGTATTTGAAGTCTTATAGAGAACAGATTATAGAAAACACAGCTAAGCCTAAATGTGTCGACTGTGACTATGTGTGTACAAAAAAAGAGATCTTACTCGGACATGTCAATCGAGACCATCTAAACCATCATCCATATACTTGTGATAAATGCGGACAACAGTTTTActctaaaattgtcctaaaaacACATATTCATAGGTTCCACGAGAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTCAGTAATATTCACATATACAATTGTCATGTTATGTCCTGTGAGGATATCAAAAGGAATTTTGCTTGCAAGGATTGCCCGGCCTCTTTTGATTCTTCTGTTAGTTTGACGAGCCATGTAAAACGCAGACATAGCACTGATATTTACCCATGCGGCTTATGCAATAGAAAGTTTCTGAAAGATTCGAAAAGGAAGGAGCACATGGTTAAGGTACATAGCAGTCTGCGGACAATGAAGAGAGTTGAAACTGTTGAATGTGTTGTGTGTCAAGAAAAATTTGATAATAAAGGAGGATTGGTACAGCATATGAAATCTCATGGCCCTAATATTACATATCCATGCAGGATATGTAATACAGAGTATTTGACTTTGAGACAGTTTCGGGCACATAACCGCAAACACAATGGACCATTTGCCACTTGCCATATCTGTGGTAAACAAATGAGAGAAGTCTtactaaaaaaacatttgactACCCACTCAGATTCTGTAGAAACATGCCAGACTTGCGGCAGATGTTTCCAAAATATTGCTTTATTAAAATACCATCAGAAAGTTCATTTAGAAAGTGTCCCTTGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTGCGGAGGCATTGGAGAGGGCATCTATTAGAAGAAGATCCTGTTCAAAAGAGAATGAAGAAACAACAGCCGAACTTGAAATGTGAGCAGTGTGACTATAAAACGTGGAACAACACACTTTTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATATGTCTGTCATATATGCAGCAAAGACTTTATAGGAAAACATTTGCTAAGAAAGCACATTGAAACGCATGATATGAAAAGTGTTGATTGCATGGTGTGTTTGAAGAGTTTTGCCAATTCAACCTGTTTGAAAATGCATTTGCGGTTACACACAGGTGAAAAACCTTTTACTTGTGAAATATGTGGGGATCGATTTCGTTCATCAAGCATTATGAATGTACATAAGTTGAAAAAGCATTCAGACAAGAGTAATATTTGTCCGTTATGTTCAAATAGGTTTTTTACTGTTAGGGATTTGAGAAGACATGTGATTAAAGTGCATTGGAAGCAGAAAAATAAGAGGTTTGATCCTCGAGAGTTGAAAGAGTTAGATAAAGAACATTATCATTTGTTTCGTGACGGTAGGAGGGTTAAAGTTGCAGATGAAGATGTCGATTTTTATATGCCGTGTTGA
- Protein Sequence
- MDSFKLKLKNVLHSTKYCGICLESDDNMSTIDEDLEIVVNERTCTKALKAIIDVVFREANYSLASTHICNSCMEKLMQSYIFIENYKETLTILDNYVNDLFGKSDDIFNHLPESNNESTNVVIVLENIHDSPEKKKMKEENESFEVKKEFTPKRNKFKCVKCHLLFPSHRVLKQHSNKCKNPKLRCKVCFRTFKNKQHINAHYRQHLKVKCKFCHKQFHKKELLEHIKTNHEEHSLKCLKCKQFYSVETFQRHTKVCQDTKEEKPQCLMCLKRYTEEELKSHTCKYSCPECTEIPCMHYKYLKSYREQIIENTAKPKCVDCDYVCTKKEILLGHVNRDHLNHHPYTCDKCGQQFYSKIVLKTHIHRFHENCFVCQYCDSEFSNIHIYNCHVMSCEDIKRNFACKDCPASFDSSVSLTSHVKRRHSTDIYPCGLCNRKFLKDSKRKEHMVKVHSSLRTMKRVETVECVVCQEKFDNKGGLVQHMKSHGPNITYPCRICNTEYLTLRQFRAHNRKHNGPFATCHICGKQMREVLLKKHLTTHSDSVETCQTCGRCFQNIALLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLLEEDPVQKRMKKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLRKHIETHDMKSVDCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNRFFTVRDLRRHVIKVHWKQKNKRFDPRELKELDKEHYHLFRDGRRVKVADEDVDFYMPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -