Crub037275.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424548.1:2731398-2735314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.75 94 5.1 1.2 1 21 165 185 165 186 0.94 2 20 0.0027 0.34 12.8 5.2 2 23 193 214 192 214 0.96 3 20 0.0058 0.73 11.7 3.3 2 23 218 239 217 239 0.95 4 20 9.3 1.2e+03 1.7 0.7 2 21 245 263 244 264 0.82 5 20 9.9 1.2e+03 1.6 1.9 2 20 274 291 274 293 0.89 6 20 0.31 38 6.3 0.7 2 23 325 347 325 347 0.94 7 20 0.0019 0.24 13.3 3.4 1 23 353 376 353 376 0.97 8 20 1.2 1.5e+02 4.4 0.2 1 14 380 393 380 401 0.80 9 20 3.3e-05 0.0041 18.8 0.3 1 23 409 432 409 432 0.96 10 20 1 1.2e+02 4.7 1.0 1 23 437 460 437 460 0.85 11 20 0.00013 0.017 16.9 0.3 2 23 473 494 472 494 0.97 12 20 0.0019 0.24 13.3 0.9 1 23 500 522 500 522 0.98 13 20 0.085 11 8.1 2.1 2 23 528 548 527 548 0.96 14 20 0.00024 0.029 16.1 0.5 2 23 554 575 554 575 0.97 15 20 0.047 5.8 8.9 0.1 2 23 580 600 579 600 0.95 16 20 9.7 1.2e+03 1.6 4.4 2 23 619 640 618 641 0.93 17 20 3e-05 0.0037 19.0 3.1 1 23 647 669 647 669 0.98 18 20 0.0012 0.16 13.9 1.4 2 23 675 696 674 696 0.96 19 20 0.054 6.7 8.7 0.8 1 23 702 725 702 725 0.93 20 20 0.023 2.9 9.9 0.3 3 23 732 753 731 753 0.95
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAAATTGAAGCTCAAAAATGTCCTGCACAGCTCAAAGTATTGTGGAATATGCTTGGAAATTGACGATATTATGAGCACCATTGACGAAGATCTGGAGATCATTGTGAATGAACGGACTTGCACTAAAGCTTTGAAGACTATCATCGATGTAGTGTTTAAACAGgcTAATTACAGTCTTGCAAGTACACACATTTGCAACAATTGTATGGGAAAATTGATCCAGTCATTCATTTTTATAGAAAATTCTAAAGAAACATTAAAAGTACTAGACAAGTATGTTGATGATTTGTTTGGTAAATCAGGTGATATTTATAATCATTTGCCAGAGTCAAACATTGAAAGTACAAATGTGGTTATTGTATTAGAATATAATATTCATGATTCTcttgtaaaagaaagaaaaggtgaatttaccaaaattaaagaagaagagattgaaaGTATTGaagtaaaaaaagaatatacccCAAAAAGAAGGAAATTCAAGTGTGTAAAATGTCTGTTATTGTTCCCATCACACAGACTATTAAAACAACATAGAATTAAATGTGAGAAGCCAAAATTACGATGCAAAGTATGTTATAAAACATTTAGAAATAAACAACATATAAACACACATTACCAACAACATTTGATAGTGAAATGCAAGTATTGTCATaaacaatttaacaaaaaagaattaGTTGAACATCTTGAAAAAAGCCATGGAGAATCCTTACTCAAATGTTCGAAATGTGAAGTATTTTACTCTTTGAAGACTTTTCAAATGCATACTAAAGTTTGCCAAGGAAAACAGGAAGAAAAACCTCAATGTTTGATGTGCCTAAAAAATTTCTCTGAAGAAGAGTTAAAGTCTCATTCATGCAAATACAGCTGTCCTGAATGCACTGAAATACCTTGCATGCATTATAAATATTTGAAGTCTTATAGAGAACAGATTATAGACAACTCAGCCAAGCCTAAATGTGTTGACTGTGACTAtgtttgtacaaaaaaagaCATCTTAATCGGACATGTCAATCGGGACCATCTAAACCATCATCCATACACTTGTGATAAATGCGGACAACAGTTTTACTCTAAAATTGTCCTAAAAACTCATATCCATAGGTTCCACGAGAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTCAGTAATATCTACATATACGAAAGTCATGTTATATCCTGTGAGGATTTCAAAAGGAGTTTTGCTTGCGAGGATTGCCCGGCCTCTTTTTATTCTTCTGATAGTTTGACGAACCATGTGAAACGTCGACATAGCACTGATATTTTCCCATGCGGCTTATGCAACAAAAAGTTCCTGAAAGATTCGAAAAGGAAGGAGCATATGGTGAAGGTACATAGCAGTCTGAAAACTATTAAGAGAGTTAAAACTGTTGAATGTGTAGTGTGTCAAGAAAAATTTGATAATAAAAGGGATTTGGTACAGCATATGAAATCTCATGGTCCTAATATTACGTATCCATGCAGGATATGCAATACAGAGTATCCGACTTTGAGACAGTTTCGGGCACATAACCGTAAACACAATGGACCATTTTCCACTTGCCATATCTGTGGTAAACAAATGAGAGAAGTCTTATTAAGAAAACATCTGACCACCCACTCAGATTCTGTAGAAACATGCGAGACATGCGGCAGATCTTTTCAAAATATTGCTTTATTAAAATACCATCAGAAAGTTCATTTAGAAAGTGTCCCTTGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTAAGGAGGCATTGGAGAGGACATCTATTAGAAGAGGATCCTGCTCAAAAGAGAATTAAAAAACAACAGCCAAACTTGAAATGTGAACAGTGCGACTATAAAACATGGAACAACACACTTTTAGAATGTCATATGAACCGCCATCATTTGAAGATAAAGCCATATGTCTGTCATATATGCAGCAAAGACTTTATAGGTAAACATTTGCTAAAAAAGCATATTGAAACGCATGACATGAAAAGCGTTGTTTGCATGGTGTGTCTGAAGAGTTTTGCCAATTCAACTTGTTTGAAAATGCATTTGCGGTTACACACAGGTGAGAAGCCTTTTACTTGTGAAATATGTGGGGACCGATTTCGTTCATCAAGCATTATGAATGTACATAAGTTAAAAAAGCATTCTGACAAGAGTAATATTTGTCCGTTATGTTCGAATAGGTTTTTTACTGTAAGGGATTTGAGAAGGCATGTGATTAAAGTGCATTGGAAGCAAAAAAATAAGAGGTTTGATCCTCGAGAGTTGAAAGGGTTAGATAAAGAACATTATCATTTGTTTCATGATGGTAGGAGAGTTAAAGTTGCGGATGAAGATGTCGATTTTTATATGCCGTGTTGA
- Protein Sequence
- MDSFKLKLKNVLHSSKYCGICLEIDDIMSTIDEDLEIIVNERTCTKALKTIIDVVFKQANYSLASTHICNNCMGKLIQSFIFIENSKETLKVLDKYVDDLFGKSGDIYNHLPESNIESTNVVIVLEYNIHDSLVKERKGEFTKIKEEEIESIEVKKEYTPKRRKFKCVKCLLLFPSHRLLKQHRIKCEKPKLRCKVCYKTFRNKQHINTHYQQHLIVKCKYCHKQFNKKELVEHLEKSHGESLLKCSKCEVFYSLKTFQMHTKVCQGKQEEKPQCLMCLKNFSEEELKSHSCKYSCPECTEIPCMHYKYLKSYREQIIDNSAKPKCVDCDYVCTKKDILIGHVNRDHLNHHPYTCDKCGQQFYSKIVLKTHIHRFHENCFVCQYCDSEFSNIYIYESHVISCEDFKRSFACEDCPASFYSSDSLTNHVKRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLKTIKRVKTVECVVCQEKFDNKRDLVQHMKSHGPNITYPCRICNTEYPTLRQFRAHNRKHNGPFSTCHICGKQMREVLLRKHLTTHSDSVETCETCGRSFQNIALLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLLEEDPAQKRIKKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNRFFTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -