Asor003309.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000009.1:11388158-11391057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0015 0.13 13.6 4.4 2 23 195 216 194 216 0.96 2 16 0.77 64 5.1 1.1 2 23 220 241 219 241 0.96 3 16 0.0013 0.11 13.8 0.7 2 23 327 349 326 349 0.96 4 16 0.00012 0.01 17.1 0.6 1 23 355 378 355 378 0.97 5 16 0.081 6.8 8.2 0.1 1 20 382 401 382 403 0.93 6 16 0.00051 0.042 15.1 1.0 1 23 411 434 411 434 0.94 7 16 1 85 4.7 1.0 1 23 439 462 439 462 0.85 8 16 0.00011 0.0094 17.2 0.1 2 23 475 496 474 496 0.97 9 16 0.0086 0.72 11.2 1.6 1 23 502 524 502 524 0.98 10 16 0.24 20 6.7 1.9 2 23 530 550 530 550 0.96 11 16 0.00036 0.03 15.6 1.0 2 23 556 577 556 577 0.97 12 16 0.077 6.5 8.2 0.2 3 23 583 602 582 602 0.97 13 16 3e-05 0.0025 19.0 3.1 1 23 649 671 649 671 0.98 14 16 0.0013 0.11 13.9 1.4 2 23 677 698 676 698 0.96 15 16 0.055 4.6 8.7 0.8 1 23 704 727 704 727 0.93 16 16 0.0024 0.2 13.0 0.4 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGATGGACAGTTTCAAGTCGAAACTCAAAAATGTCCTCCAAAGTACAAAGTTTTGTGGGATATGCTTGGAAAGTGAAGATAATATGAGCACCACTGACGAAACCCTGGAGGTCATTGTATATGAACAGGCCCGCACGAAAGCTTTGAAGGCTATCATTGATGTAGTGTTTATAGAGACAAATTATTGCCTAGCAAGTTCATTCATATGTAACAGTTGTATTGAAAAACTGATTCAGTCATACATTTTCATAGAAAATGCGAAGAAAACATTCAAGATTTTAGACAACTATGTCAACGATTTGTTTAGCAAATCAGATGATATTTTCAATCATTTGCCGGAGTCCAGCATTGAAAGTACAAATGTTGTTATtgtattagaaaataatatcCATGATTCTTTTGAAACCGGGAAAAGAAAACATGAGTTTAACAAAATTgaagaagaaaataatgaaatctTTAAGGTGAAAAAAGAATTTGctccaaaaagaaagaaaatcaacTGTGCAAAATGTCTGGTAACGCTACCCTCGCTCAGAGCGTTAAAGATGCATAGAATTAAATGTAAGAAGCAGATATTACGATGTAGACTGTGTTttaagatatttaaaaataaacaacatttaaatgtaCATTACAAACTGCATTTAAAAGTGAAATGCAAGTTTTGTCCTGAAATACTTCATAAAAAGGAATTACTGGACCATCTTGAAACTAACCATGGAGATTCTTTACTCAAATGTTTGAAATGTGAATTGTTTTACTCCTTAAAAACTTATCAAACCCACACCAAAGTCTGccaacaaataaaagaagaacAATCTCAATGCTTAATGTGCCTTAAAACTTATACTGAAAAAGAATTCAAGTCCCATAACTGCAGGTACAGCTGCCCAGAATGTACCGAAGTACCTTGCATGCATTATAAGTATTTGAAGTCTTATCGGGAACAGACTTTAAACAACACAGACAAGACCAAATGTGTTGACTGCGACTATGTGTGTGCTAGAAAAGAGAATTTACTCGGACATGTGAATAAGGAACATTTAAACAATCATCCATATACCTGTGATAAATGCGGACAACAGTTTTATTCTAAAGTAGTTTTAAAAGCTCATATTATCAGGTTCCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATATAGTAATATTAACAATTACGAAAGCCATGTAATATCTTGTGAGGATATCAAAAGGAAGTTTGCTTGTGACAACTGTCCAGCCTCTTTTGATTCCTCTGACAGTTTGACAAACCATACACAACATAGACATAGCACAGATATTTTTCCATGTGGGCTTTGCAATAAAAAGTTCCTAAAAGACTCTAAAAGGAAAGAGCATATGGTTAAAGTACATAGCAGTCTCCGAATTAAGAAGAAGGATAAAAATATAGAATGTGTTGTGTGTCAAGAAAAGTTTGATAACAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCGCACACTACATATCCATGCAGGATATGCAATACAGAGTATCAGACTTTGAGACAGTTTCGGGCACATAATCGCAAACACAACGGACCGTTTGCAACATGCCATGTTTGTGGTAAAGAAATGAGAGAAATCCTTCTGAAAAAACATCTGACTACCCACTCAGATGCTGTAGAGACATGTGAGACTTGTGGTAGATCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAATTCATCTAGAAAGTGTTGCATGTCCTAAGTGTAAGAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGGCATATCATGGAAGAGAATCCTGCTCAAAAAGGAATTAGGAAACAACAACCAAACTTGAAATGTGAACAATGTAACTATAAGACATGGAACAACACACTTCTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATATGTCTGCCACATATGCAGCAAAGACTTCATAGGAAAACATTTACTGAAAAAGCATATTGAAACACATGACATGAAAAGCGTTGTCTGTATGGTGTGCCTGAAGAGTTTTGCCAATTCGACTTGCTTGAAAATGCATTTGCGGTTGCATACAGGCGAGAAGCCTTTCACTTGTGAAATATGTGGGGACCGATTCCGGTCATCCAGCATTATGAACGTGCACAAGTTAAAGAAACATTCTGGTAAGAGTTATATTTGCCCATTGTgttcaaataagttttatactgTAAGGGATTTGCGAAGACATGTGATTAAAGTCCATTGGAAGCAGAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGATAAAGAACATTATCATTTGTTTCATGATGGCAGAAGAGTTAAAGTGGCTGACgaagatgttgatttttataTGCCTTGTTGA
- Protein Sequence
- MMDSFKSKLKNVLQSTKFCGICLESEDNMSTTDETLEVIVYEQARTKALKAIIDVVFIETNYCLASSFICNSCIEKLIQSYIFIENAKKTFKILDNYVNDLFSKSDDIFNHLPESSIESTNVVIVLENNIHDSFETGKRKHEFNKIEEENNEIFKVKKEFAPKRKKINCAKCLVTLPSLRALKMHRIKCKKQILRCRLCFKIFKNKQHLNVHYKLHLKVKCKFCPEILHKKELLDHLETNHGDSLLKCLKCELFYSLKTYQTHTKVCQQIKEEQSQCLMCLKTYTEKEFKSHNCRYSCPECTEVPCMHYKYLKSYREQTLNNTDKTKCVDCDYVCARKENLLGHVNKEHLNNHPYTCDKCGQQFYSKVVLKAHIIRFHENCFVCQYCDSEYSNINNYESHVISCEDIKRKFACDNCPASFDSSDSLTNHTQHRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLRIKKKDKNIECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDAVETCETCGRSFQNITLLKYHQKIHLESVACPKCKKMINPARLRRHWRGHIMEENPAQKGIRKQQPNLKCEQCNYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00121841;
- 80% Identity
- -