Alyc037773.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796872.1:18480596-18487603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6 2e+02 4.1 0.2 1 21 296 316 296 317 0.94 2 17 0.0035 0.43 12.5 4.8 3 23 325 345 323 345 0.97 3 17 1.4 1.7e+02 4.3 0.4 2 23 349 370 348 370 0.95 4 17 0.00096 0.12 14.3 0.7 2 23 456 478 455 478 0.96 5 17 0.00025 0.031 16.1 1.3 1 23 484 507 484 507 0.97 6 17 0.045 5.6 9.0 0.2 1 20 511 530 511 532 0.93 7 17 0.00037 0.046 15.6 0.2 1 23 540 563 540 563 0.96 8 17 1.2 1.5e+02 4.5 1.0 1 23 568 591 568 591 0.85 9 17 0.00015 0.019 16.8 0.1 2 23 604 625 603 625 0.97 10 17 0.01 1.3 11.0 1.6 1 23 631 653 631 653 0.98 11 17 0.48 60 5.8 2.4 2 23 659 679 659 679 0.96 12 17 0.00041 0.051 15.4 1.0 2 23 685 706 685 706 0.97 13 17 0.057 7.2 8.7 0.1 2 23 711 731 710 731 0.95 14 17 3.7e-05 0.0046 18.7 3.0 1 23 778 800 778 800 0.98 15 17 0.0037 0.47 12.4 1.7 2 23 806 827 805 827 0.96 16 17 0.066 8.3 8.5 0.8 1 23 833 856 833 856 0.93 17 17 0.0031 0.39 12.6 0.4 1 23 861 884 861 884 0.96
Sequence Information
- Coding Sequence
- ATGCCGAGAAAAGTTTGCTGTGTTCCTGGGTGCTCAATCGTAGCAACAGATGgtATACCTCTGCATCACTTTCCAAATCCTAAAATGTCTGCCGAAAAGTTTCAAGTTTGGGTGACGGGTGTTGGGGCACCAACTGCAAGTCCATTGGTTCCACACAGCCAATCATCTACTTCCCAAGAAGCTTCAGTATTGAATCCTGTCAATCAACACTCCATAACAGTTGAATACAGTTCTCGCAGTGTGCCAACTACAAGTCCATTGGTTCCAGACAGCCGATCAATTACTTCCCAAGAAGCTTCAGTATTGAATCCTGTAATTCAACACTCTACAACAGTAAAAGCTGTTGTAATAGGGCTTAGTAGTGGTCTTGAAAAGATGGACAGTTTCAAGTTGAAGCTCAAAAATGTCCTTCACAGTACAAAGTATTGTGGGGTATGCTTGGAAAGTGAAGAAAATATGAGCACCATGGACGAAAATCTGGAGATCATTGTGAATGAACGAACTTGCACGAAAGCTTTGAAGGCTATCATTGAAGTAGTGTTTAAAAAGACTAATTACAGCCTAGCAAGTTCACTCATGTGCAACAGTTGTGTGGAAAAACTGATTCAGTCATACATTTTCATAGAAAATGCAAAAGAAACAGCCAAGATTTTAGACAACTATGTCAACGATTTGTTTAGCAAATCAGATGATATTTTCAATCATTTACCGAAGTCAACCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATACCCATGATTCTTCGGAAAAAAAGGCAATAAAAGATGAGTTTAACATAATGGCGAAAACACATAACGAAATCATTGAAGTGAAAAAAGAATTTACTCCATATACATACTCTCgtaaaagaaagaaattcaAATGTGCAAAATGTCTGGTAACACTACCCTCACTGAGAGCATTAAAGATGCATAGAATGAAATGCAAGAAGCAGATATTGCTATGTAGACTATGTtttaagacatttaaaaataaacaacatttaaaTTTACATTACAAACTGCATTTGAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCTTAAAAAAGAATTATTGGACCATATTAAAACTAACCATGGAGATTCTTTACTAAAATGTTTGAAATGTGAACTGTTTTACACTTTAAAAACTATTCAAACTCACTCTAAAGTCTGCCGACAAATAAAAGAAGACAAACCTCAATGTTTGATGTGCCTAAAGacctataatgaaaaagaatTCAACTCCCATACTTGCAAGTATAGCTGCCCAGAATGTACCGAAATACCTTGCAtgcattataattatttgaagTCATATAGGGAACAGACTTTAAACAAAGCAGACAAGATTAAATGTGTTGACTGCGACTATATTTGTACAAGAAAAGATAATTTACTTGGACATGTGAACAAGGTCCATTTAAACAATCAACCATATACCTGTGATAAATGCGGACAGCAATTTTATTCTAAAGTAGTTTTAAAATCTCATATTCTTCGGTTCCATGAAAACTGTTTTGTGTGTCGGTATTGTGATTCAGAATTTAGTAATATTAACAATTACGAAAGTCATGTCATATCCTGTGAGGATATCAGAAGGAAGTTTGCTTGTGACAATTGTCCAGCCTCTTTTGATTTGTCTGACAGTTTGACAAACCATATAAAACGTAGACATAGTATGGATATTTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAACGAAAAGAGCATATGGTTAAAGTACATAGTAGTCTCCAAATTAAGAAAAGGGATAAGAATGTAGAATGTGTTGTGTGCCAAGAGAAGTTTGATAATAAAGGAGAATTGGTCCAGCATATGAAATCTCATGGTCCGCATACTACGTATCCATGTAGAATATGCAATACAGAGTATCAGACTCTGAGACAGTTTCGGGCACATAATCGTAAACACAACGGACCATTTGCTACATGCCATGTTTGTGGTAAGCAAATGAGAGAAATCttactaaaaaaacatctgACTACCCACTCAGATTCTGTAGAAACATGTGAGACTTGTGGCAGGTCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCACTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGGCATCTAATGGAAGAAAATCCTGCTCAAAAAGGAATTAGGAAACAACAGCCAAATTTGAAATGTGAACAGTGTGAATATAAAACATGGAACAACACACTTCTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATACGTCTGCCATATATGCAGCAAAGACTTCATAGGAAAACATTTGCTGAGAAAGCATATTGAAACACATGACATGAAAAGTGTTGTCTGTATGGTGTGCCTGAAGAGGTTTGCCAACTCTACTTGTTTGAAAATGCATTTGCGTCTTCATACAGGTGAAAAACCTTTTACTTGTGAGATATGTGGGGACCGATTTCGGTCATCAAGCATTATGAACGTACACAAGTTAAAAAAGCATTCCGGCAAGAGTTATATTTGCCCGTTAtgttcaaataaattttatactaTAAGGGATTTACGAAGACATGTGATTAAAGTGCATTGGAAGCAAAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGATAAAGAACATTATCATTTGTTTCATGATGGGAGGAGAGTTAAAGTTGCTGATGAAGATGTCGATTTTTATATGCCTCCTTGA
- Protein Sequence
- MPRKVCCVPGCSIVATDGIPLHHFPNPKMSAEKFQVWVTGVGAPTASPLVPHSQSSTSQEASVLNPVNQHSITVEYSSRSVPTTSPLVPDSRSITSQEASVLNPVIQHSTTVKAVVIGLSSGLEKMDSFKLKLKNVLHSTKYCGVCLESEENMSTMDENLEIIVNERTCTKALKAIIEVVFKKTNYSLASSLMCNSCVEKLIQSYIFIENAKETAKILDNYVNDLFSKSDDIFNHLPKSTIESTNVVIVLENNTHDSSEKKAIKDEFNIMAKTHNEIIEVKKEFTPYTYSRKRKKFKCAKCLVTLPSLRALKMHRMKCKKQILLCRLCFKTFKNKQHLNLHYKLHLKVKCKFCPEILLKKELLDHIKTNHGDSLLKCLKCELFYTLKTIQTHSKVCRQIKEDKPQCLMCLKTYNEKEFNSHTCKYSCPECTEIPCMHYNYLKSYREQTLNKADKIKCVDCDYICTRKDNLLGHVNKVHLNNQPYTCDKCGQQFYSKVVLKSHILRFHENCFVCRYCDSEFSNINNYESHVISCEDIRRKFACDNCPASFDLSDSLTNHIKRRHSMDIFPCGLCNKKFLKDSKRKEHMVKVHSSLQIKKRDKNVECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPAQKGIRKQQPNLKCEQCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLRKHIETHDMKSVVCMVCLKRFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTIRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00037168;
- 80% Identity
- -