Mcon014408.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01005181.1:207117-210744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.13 13.3 6.5 1 23 199 221 199 221 0.96 2 17 5.3 5.1e+02 2.1 0.6 2 23 225 246 224 246 0.92 3 17 5.6 5.3e+02 2.0 4.2 2 19 281 297 281 300 0.88 4 17 0.017 1.6 9.9 0.9 2 23 332 354 331 354 0.95 5 17 1.7e-05 0.0016 19.4 1.0 1 23 360 383 360 383 0.97 6 17 0.081 7.7 7.8 0.3 1 21 387 407 387 408 0.94 7 17 3.2e-05 0.003 18.5 0.3 1 23 416 439 416 439 0.97 8 17 0.6 57 5.0 0.9 1 23 444 467 444 467 0.92 9 17 0.0014 0.13 13.3 0.2 5 23 483 501 480 501 0.92 10 17 0.00096 0.091 13.8 1.8 1 23 507 529 507 529 0.98 11 17 0.18 17 6.7 1.9 2 23 535 555 535 555 0.96 12 17 0.00034 0.032 15.3 1.0 2 23 561 582 561 582 0.97 13 17 0.0061 0.58 11.3 0.2 2 23 587 607 586 607 0.96 14 17 2.3e-05 0.0021 19.0 3.1 1 23 653 675 653 675 0.98 15 17 0.0012 0.11 13.5 2.1 2 23 681 702 680 702 0.97 16 17 0.041 3.9 8.7 0.8 1 23 708 731 708 731 0.93 17 17 0.022 2.1 9.6 1.3 3 23 738 759 737 759 0.96
Sequence Information
- Coding Sequence
- ATGTCAATTGAGCGCATGGAAAGTTTCAAGCTGAAGCTAAAAAATGTCCTGCACAATTCAAAGTTCTGTGGAATATGCTTGGACAGTGACGACAGAATGAGCACTGTTGACGAAGATCTGGAGATCATTGTGAATGAACGCACTCGTACTAAGACTTTACAGGCTATCATTGATATAGTGTTCGATGAGGCAAATTACAGCATAGCAAGTTCACACATTTGCAATAGCTGTATGGAAAAACTGATTCAGTCATacattttcattgaaaatgCTAAGGAAACTTCTCAAATTTTAGACAATTATGTCAATGACTTATTTAGCAAATCAGatgatatttttaatcatttgccAGAGTCAAACATTGAAGGTTCAAATGTTGTTAttgtattagaaaataatatccaTGATGATTCTCCGAATGTAAGGGACTTACAAGATGagtctaatttaaaaatagaagaaaagaaTGAAATCtttgaattgaaaaaagaattttcaccaaaaagaaagaaattcaAATGTGTTAAATGTCTGTCAATGCTGCCAACACACAGAGCGTTGAAGATACATAGAATGAAATGCAAGAAGCATATATTCCGATGTAGATTATGCCTTAAAACATTTAGAAACAAACAACATTTGAAAGCACATCATGAACTGCACTTGAAAGTGAAATGCAAGTTCTGTCAAGAAATACTTCTAAAAAAAGAATTACTGGATCATCTGAAAATTAACCACGGTGATACTAAAATCAAGTGTTTAAAATGTGATTTGTATTATTCTTTAAATACTTATCAAACTCACTGTGAGGTatgtcaacaaataaaagaagATAATCCTCAATGCCTGATGTGCCTAAAGACTTTTACTAAAAAAGAATTCAAGTCTCACAACTGCAAGTACAGTTGCCCAGAATGTGCCGAAGTTCCTTGTGTACACTATAGGTATTTGCAGTCATATAGAGAACAGATTTTAAACAGCGCAGACAAAACCAAATGCGTTGATTGTGACtatgtttgtaaaagaaaaGAAGTATTACTGGGACACGTGAACCGGGACCATTTAAACAATCATCCATACACTTGTGATAAATGTGGGAAACAGTTTTATTCCAAAGTCGTTTTAAAAGCTCATATTCTTAGGTTCCatgaaaactgttttgtttgccGGTTTTGTGATTCAGAATTCAGTAATATTAACAATTACGAAACTCATGTACAATCCTGTGAGGATATAAAGAGGGAGTTTGTGTGTGAAAATTGTCCGGCCTCTTTTGACTCTTCTGACAGTTTGACGAACCATGTCAAGCGTAGGCATAGCACAGATATCTTCCCATGCGGTCTTTGCAGTAAAAAGTTCCTGAAAGAGTCCAAAAGGAAAGAGCATATGGTCAAAGTCCATAGCAGTCTCCGAATGAAAAACAGGGATAAAAATGTAGAATGTATTGTGTGCCAAGAAAAGTTTGAAAACAAAGGAGATTTGGTGCAGCATATGAAATCTCACGGTCCTAATATAACATATCCATGCAGGATCTGCAACACAGAGTATCGGACTTTGAGGCAGTTTCGAGCACATAATCGCAAACATAATGGGCCATTTGCCACTTGCCATGTTTGTGGTAAAGAAATGAGAGAAATTCTCCTGAAGAAACATCTGACTACACACTCAGATTCGGTAGAAACTTGTGAAACTTGTGGCAGATCATTTCAAAGTATCACTTTACTAAAATACCACCAGAAAGTTCATTTAGAGAGTGTGCCATGTCCGAAATGTAATAAGATGATCAACCCATCCAGACTACGTAGGCATTGGAGAGGACATCTAATGGAAGAAAATCCTCAGAAAGGAATGAAGAAACAACAGCCAAACTTGAAATGTGAACTGTGCGAATATAAAACATGGAACAATACACTTCTAGAATGTCATATGAACCGTCACCACCTAAAAATCAAGCCGTATGTCTGCCACATATGCAGCAAAGACTTCATAGGGAAACACTTACTGAAAAAGCATATTGAAACGCATGGCATGAAAAGCGTTACCTGCATGGTGTGTCTGAAGAGTTTCGCCAACTCGACTTGCCTGAAAATGCATCTGCGATTACACACTGGAGAAAAACCTTTCACTTGTGAGATTTGCGGGGACCGATTTCGGTCATCGAGCATAATGAACGTCCACAAGTTGAAAAAGCATTCGGATAAGAGTAATATTTGTCCGTTATGTTCAAACAAGTTTCATACAATAAGGGATTTGAGGAGACATTTGATAAAGGTGCACTGGAAGCAGAAAAATAAGAGGTTTGATCCTCGAGAGCTGAAAGGATTGgatgaaaaatattatcatttgtttcatgatGGAAGGAGGGTTAAAGTCGCTGATGAAGATGTTGATTTGTATATGCCTTGTTGA
- Protein Sequence
- MSIERMESFKLKLKNVLHNSKFCGICLDSDDRMSTVDEDLEIIVNERTRTKTLQAIIDIVFDEANYSIASSHICNSCMEKLIQSYIFIENAKETSQILDNYVNDLFSKSDDIFNHLPESNIEGSNVVIVLENNIHDDSPNVRDLQDESNLKIEEKNEIFELKKEFSPKRKKFKCVKCLSMLPTHRALKIHRMKCKKHIFRCRLCLKTFRNKQHLKAHHELHLKVKCKFCQEILLKKELLDHLKINHGDTKIKCLKCDLYYSLNTYQTHCEVCQQIKEDNPQCLMCLKTFTKKEFKSHNCKYSCPECAEVPCVHYRYLQSYREQILNSADKTKCVDCDYVCKRKEVLLGHVNRDHLNNHPYTCDKCGKQFYSKVVLKAHILRFHENCFVCRFCDSEFSNINNYETHVQSCEDIKREFVCENCPASFDSSDSLTNHVKRRHSTDIFPCGLCSKKFLKESKRKEHMVKVHSSLRMKNRDKNVECIVCQEKFENKGDLVQHMKSHGPNITYPCRICNTEYRTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDSVETCETCGRSFQSITLLKYHQKVHLESVPCPKCNKMINPSRLRRHWRGHLMEENPQKGMKKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHGMKSVTCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNKFHTIRDLRRHLIKVHWKQKNKRFDPRELKGLDEKYYHLFHDGRRVKVADEDVDLYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00974074;
- 80% Identity
- -