Anig010277.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382317.1:15521736-15524969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00064 0.054 14.6 5.3 2 23 185 206 184 206 0.96 2 17 0.012 1 10.6 2.2 2 23 210 231 209 231 0.97 3 17 1.8 1.5e+02 3.7 2.3 2 21 266 284 266 285 0.90 4 17 0.00073 0.062 14.4 0.7 2 23 317 339 316 339 0.95 5 17 5.2e-05 0.0044 18.0 0.7 1 23 345 368 345 368 0.97 6 17 0.016 1.3 10.2 0.3 1 20 372 391 372 393 0.94 7 17 0.00064 0.054 14.6 0.2 1 23 401 424 401 424 0.96 8 17 0.87 73 4.7 1.0 1 23 429 452 429 452 0.85 9 17 0.0001 0.0089 17.1 0.1 2 23 465 486 464 486 0.97 10 17 0.0021 0.17 13.0 1.7 1 23 492 514 492 514 0.98 11 17 0.2 17 6.7 1.9 2 23 520 540 520 540 0.96 12 17 0.00031 0.026 15.6 1.0 2 23 546 567 546 567 0.97 13 17 0.025 2.2 9.6 0.1 2 23 572 592 571 592 0.96 14 17 2.6e-05 0.0022 19.0 3.1 1 23 639 661 639 661 0.98 15 17 0.0011 0.091 13.9 1.4 2 23 667 688 666 688 0.96 16 17 0.046 3.9 8.7 0.8 1 23 694 717 694 717 0.93 17 17 0.002 0.17 13.0 0.4 1 23 722 745 722 745 0.96
Sequence Information
- Coding Sequence
- ATGGACGGTTTCAAGTCCAAACTCAAAAATGTCCTTCATAGTACCAAGTATTGTGGAATATGCTTGGAAAGTGAAGAATATATGAGCACCATTAACGAAAATCTGGAGATCATTATCAATGAACGTACTCGCACGAAAGCTTTAAAGGCTATTGTTGATGTGGTGTTTAAAGAGGCTAATTACAGCTTAGCAAGTTCATTCATATGCAACAGTTGTATGGAAAAACTGATACAGTCATACGTTTTCACAGAAAATGCGAAGGAGACATCAAATATTTTAGACAACTATGTCAATGATTTGTTTAGCAAATCAGATGATATTTTCAATCATTTGCCGAATTCAAGCATTGAAAGTACGAATGTTGTTATTGTATTAGAAAATAATATCCATGAATCTTCTGAAAAAAGGGAACGTAAAAATAAGTTTAACATAAAGACAGAAGAAAATAATGAAATCTTCAAAGTGAAAGAAGAGATAACTCCAAAAAGAAAGAAAGATCTCTCACTCAGAGCGTTAAAGACGCATAGAATGAAATGTAAGAAGCAAATATTACGATGTAGACTATGTTTTAAAACATTTAAAAACAAACAACATTTAAATGTACATTACAAACTGCATTTAAAAGTGAAATGTAAATTTTGCCCTGAAATATTTCACAAAAAAGAATTGCTGGATCATCTTAAAACTAACCATGGAGATTCTTTACTCAAATGTTTGAAATGTGAACTGTTTTACTCCATAAACACTTATCAAACTCACACTAAAGTGTGCCAAGAAATAAAAGAAGATAAACCTCAATGCTTGATGTGCCTAAAGACCTTTAGTGAAAAAGAATTGAACTCCCATACCTGCAGGTACAGCTGTCCAGAATGTATGGAAGTACCTTGCATACATTACAAGTATTTGAAATCTTATAGGGAACAGACTTTAACCAATGCAGACAAAATCAAATGTGTTGATTGCGACTATGTTTGTACAAGAAAAGAGAATTTACTTGGACATGCGAATAAGGACCATTTAAACAATCATCCGTATACCTGTGATAAATGCGGACAGCAGTTTTATTCTAAAGCAGTCTTAAAAGCTCATATTCTTAGATTTCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTTAGTAATATTAATAATTACGAAAGTCATGTAATGTTCTGTGAGGATATCAAAAGGAAGTTTGCTTGTGACAATTGTCCAGCCTCTTTTGATTCCTCTGGTAGTTTGGCGAACCATAAACAACGCAGACATAGCACAGATATTTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGGAAAGAGCACATGGTTAAAGTACATAGTAGTCTCCAAATTAAGAATAAGGATAAAACTGTAGAATGTGTTGTGTGTCAAGAAAAGTTTGAAAATAAAGGAGAATTAGTACAGCATATGAAATCTCATGGTCCATATACAACATATCCATGCAAGATATGCAACACAGAGTATCAGACTTTGAGACAGTTTCGGGCCCATAATCGTAAACACAATGGACCATTTGCTACATGCCATGTTTGTGGTAAGGAAATGAGAGAAATCCTACTAAAAAAACATCTAACTACTCACTCAGATGCTGTAGAAACATGTGAGACTTGTGGCAGATCATTTCAAAACATCACTCTATTAAAATACCATCAGAAAATTCATTTAGAAAGTGTCCCTTGTCCTAAATGTAACAAAATGATCAACCCAGCTAGACTACGCAGGCATTGGAGAGGGCATATAATGGAAGAGAATCCCGCTCAAAAAGGAATTAGGAAACAGCAGCCAAATTTGAAATGTGAACAGTGTGAATATAAGACATGGAACAACACACTTCTGGAATGTCATATGAACCGTCATCATTTGAAAATTAAGCCATATGTCTGCCATATATGCAGCAAAGACTTCATAGGGAAACATTTGCTAAAAAAGCATATTGAAACGCATGACATGAAAAGCGTTGTCTGCATGGTGTGTTTAAAGAGTTTTGCAAACTCAACTTGCTTAAAAATGCATTTGCGCCTACACACAGGTGAAAAGCCATTTACTTGTGAAATATGTGGGGACCGATTTCGGTCATCCAGCATTATGAATGTACACAAGTTGAAAAAGCATTCTGGCAAGAGTTATATTTGTCCGTTGTGTTCAAATAAGTTTTATACTGTAAGGGATTTGCGACGACATGTTATTAAAGTGCATTGGAAACAGAAAAATAAGAGGTTTGACCCTAGAGAGTTAAAAGGGCTGGATAAAGAACATTATCATTTGTTTCATGACGGTAGAAGAGTCAAAGTTGCTGACGAAGATGTCGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MDGFKSKLKNVLHSTKYCGICLESEEYMSTINENLEIIINERTRTKALKAIVDVVFKEANYSLASSFICNSCMEKLIQSYVFTENAKETSNILDNYVNDLFSKSDDIFNHLPNSSIESTNVVIVLENNIHESSEKRERKNKFNIKTEENNEIFKVKEEITPKRKKDLSLRALKTHRMKCKKQILRCRLCFKTFKNKQHLNVHYKLHLKVKCKFCPEIFHKKELLDHLKTNHGDSLLKCLKCELFYSINTYQTHTKVCQEIKEDKPQCLMCLKTFSEKELNSHTCRYSCPECMEVPCIHYKYLKSYREQTLTNADKIKCVDCDYVCTRKENLLGHANKDHLNNHPYTCDKCGQQFYSKAVLKAHILRFHENCFVCQYCDSEFSNINNYESHVMFCEDIKRKFACDNCPASFDSSGSLANHKQRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLQIKNKDKTVECVVCQEKFENKGELVQHMKSHGPYTTYPCKICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDAVETCETCGRSFQNITLLKYHQKIHLESVPCPKCNKMINPARLRRHWRGHIMEENPAQKGIRKQQPNLKCEQCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -