Lcam012093.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Limenitis camilla
Gene Symbol
-
Assembly
GCA_905147385.1
Location
LR990229.1:10878232-10886763[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0037 0.33 12.2 1.0 3 23 207 228 206 228 0.96
2 22 0.26 23 6.4 0.3 1 22 608 629 608 629 0.95
3 22 5.1 4.6e+02 2.3 0.3 1 22 671 692 671 694 0.82
4 22 0.36 32 5.9 0.7 1 14 703 716 703 724 0.80
5 22 0.11 9.4 7.6 1.1 3 21 774 792 772 795 0.93
6 22 0.037 3.3 9.0 5.3 1 23 801 824 801 824 0.95
7 22 0.24 22 6.5 0.0 1 23 849 872 849 872 0.90
8 22 0.014 1.3 10.3 3.4 1 23 877 899 877 899 0.97
9 22 0.0062 0.56 11.5 0.1 1 23 905 928 905 928 0.95
10 22 0.0051 0.45 11.8 1.7 1 23 940 962 940 962 0.97
11 22 0.0011 0.098 13.8 4.0 1 23 1004 1027 1004 1027 0.96
12 22 0.0036 0.32 12.2 1.7 1 23 1087 1110 1087 1110 0.96
13 22 0.14 13 7.2 1.9 2 23 1137 1159 1136 1159 0.95
14 22 0.066 5.9 8.2 0.1 2 23 1165 1187 1164 1187 0.93
15 22 0.0075 0.67 11.2 0.2 1 21 1231 1251 1231 1252 0.95
16 22 0.00094 0.084 14.1 0.6 1 23 1262 1284 1262 1284 0.93
17 22 0.0002 0.018 16.2 0.5 2 23 1374 1396 1373 1396 0.93
18 22 1.4e-07 1.2e-05 26.1 1.1 3 23 1403 1423 1402 1423 0.98
19 22 0.0024 0.21 12.8 0.2 1 23 1440 1463 1440 1463 0.94
20 22 0.036 3.2 9.1 0.0 1 23 1482 1504 1482 1504 0.98
21 22 0.021 1.9 9.8 0.6 1 23 1510 1533 1510 1533 0.95
22 22 0.00019 0.017 16.2 0.4 1 23 1541 1564 1541 1564 0.96

Sequence Information

Coding Sequence
ATGAATGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGGTGCGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGCCCTTGCCTCGAAAATCAAAGATTGCGTGTCAGTGCAGATAAGCGAATATGACGACCTGCCAACGAATGTCTGCAGGAAATGCATGGACAATGTTAATAACTGGCACATATTTAAGACAGTTTGTGAAAAATCACAAAATAAATTACAGTCTCTGATTAATAAGGAGAGCAACCTACTAGAAGAGGTAAAAGTAAAAAATGAACCATTATCAGATGAAGCCTATGATGATGGAGTTGTTATTGATGGCTCCTACCCTGATGTTGAGAATGCTGGGCCATCTAGTAAAGTACAGCCTGAGGGTCCACCCATTCTGGCTTCATTGGGACTCACACCGAGAAGTGATAAGGGTATGGAAAGTGAGAAAGACGAAGATTTTGAAGATGAAGATGAATTACTAGAGCCTCACTCCTTTACAAACGTTCCTACAATGCCTGAAGTTTCTATTACTGTCATGCGTCCTACCGGGGAAACTCTACATGCCAGGCAAGGTATTCAACAACTAGCCTCAAAGGACTGCTTAGTTTGTGGAAGGTCCTATAGATATTCTCATAATGCAAGAAGACATGAACTTACTGCTCATAGCTTCGATAGGTATACCAATAAAGTTACTAATAAAAAAACACAAACTCATATGCAACCGAAATTTAGACCCAACCCTTTCAACCCCAAAGCACGATTAATGCCGAACCCTATAAGCCACAAAATGCAGTTCCACTCAAAATCAATGCCAACCAAAATGATACCTCATAAAGTGGTTGCGCAACCAAAGCCAATACCAATTAAAACTCCAAAAGTGCAACAGAATAATTTACCATATCCGCTTCGTATTAAAGCTTTAAAAGACCTGCAAATTAAGAAAAAAGAACCACAAATTTTGAAAACATTATTAACTTCTAAACCAGAGATTTTAGTTTCGGAACCTGAAATAGTGAATTCTGGACCGGAAAGTCCAGAGACATTAATATCGGAACCGGAAATAGCATCATTCCAAGTAGAAACTATCCTGTCGGAACCAGACACATTTATTAACCAACAACGTGAAGAAGATGATGAAAATAATCAAGGGCAAAATTATGATACTGTTGATATGGACTCGGAAAACGAAATAGAAATAGCGCGTCAACAAGAGAATGAAGAAGAAGATAATGAAAACCCAACAGAAAATGATGCAGAAGAAAATGTTCAAGAAGACAATATTCAGGAAGAAAACAATATCGATGAAAATCATGACAATGAAGACAAAGAAGACGACAATGGAGAAAGTCAAGATATTGATATGGAAAATGCAGAAAACAATATTGATGCTGATGGAGAAGATGATAATGCCAAAGAAGATTATGAGAGCCAAGAGAAAGAAAATGAAATTGTTAACAATGAGGAAAACGACGAAGACGATGGGGAAATGCCTCCTATGAATATAGCTCCTGTTGTTGAGATTAACGAAGATGTACAAACAAATTCTTATAATAGTGATAATAACATAAATGAGGAAGAGATGGATGAAACCGTAGATCCCAATGATACTCTCGACGGGGATGAAAAGGACCTTGATCCTGATAAAGTGTATGTTACAAAAACGCAGAGAGACTTCATTCTTAAGTATCGTGATATTATAGAACAGATTAATACGAAACGGTGTTTATGTTGTAACAAGGAACACCCTCGAAGAAAAGCTGTCATACAGCATTTACAAAAGAATGGCCATAAAGTTCCTAAGCATACATGTTATAATTGTGTTGTCACATTTGGTCATATCGGAGCATTACTAAGCCACATGAGATCTAATACATGCACGGACTTGTGGAAAATCATTTACAACGAAAATGGAATCACAGATGATATAGTCATAGAAGATGAGCCCAAAGATTCTAAAGCTCAGTACAAAGATATTCTTAATGCCAGATCATATGCATGCAAATTATGTCCGGCTAAGTTCCAATTGAAACAATTTATAATGAAGCACGTTCTCGATGTTCACGAGGATGGTCAGACGCGAGTACCCCACGCCTGCGTACATTGCGGATTACGATTTAAGGACAAATCTATAGGAAAGAAACATATTCGTAATGGAGACTGTACAGTATATATCTGTTGCGAGATTTGTTCCGAAAAATTCTTGAATTTACAGGATTTCAGCGATCACGCTATTGCAGTTCACGCTGGTAGCTTCGATCCTGATAGTCAGAACAAGTGCGTCGACGGTAGGCCTACAGATTGTCCAATATGTGGCAAGAAGAACACTAGCTATCCAAATTTGGTTAAGCATTTGAAGTGTATTCATAATGAAGAGAAGCCTCACCATTGTCAACATTGTGACTCCAAATTTGAACAAACTGCGGATCTTAACAAACACATCTATATGGAACATTCCGATAGGACTTTAGGAATGTCATCGGAGCCAGATATGTCTCTCGTCAAGGAAGAAGCCGATGAGTATCATTATTCGTGCACGGAATGCAATTCCATTTTTGAAACCGTCGATGCTTGGACGGACCACCAGGTTGCTGAACATAATCAAGTTGCTCATCACTGTGATCAGTGTGAGAAGAAATTCCTGCGACCATCAGAACTTGCGGAGCATAAGAACACACATCTAAGAGTCAAGTTCTATCCTTGCAGTATTTGTACGAATTCATACAGTACGCCGCAAAAACTAGCGGAGCATGTTCAACAAGTACATCCAGGAGCTGGAAAAATACCTGTCGATTCTGAATTTTTCTGTGACATATGTATAAGGAAATTTAAGAGCCGCCAAGCTTATTCTAATCATATGAGAATTCATGCCAAAGTGCCTACAACTAATCGGAAACCCGAACCGAAAGGATTTCCGCCACAAATTATTGGAAAGCCAATACGACAATATCCGATGCAACCCGGGTTTAGCCCCTACGTTCCAAACGCACCTTATTGTTGTGATATCTGCGGCAAAGGATTCATGCACAAGAAAAACATATGGAAACATAAAAAAGTGCTTCACGCGGATCTTCTCGCCGACAGGAACGACAGTGAAGAGAATACAATGCAAGCTTCCACTGAAGAAGATGATTATAATATTGACGAAAATGGCACTATACTATCGACTCCTCAATTCAATAGTTTTAACTTTACTAATTTGTCAAATAATATGCTACAAAATTCCCAGGACGCATTACCATACTCCTGTGAGTTATGCTTCAAACGATTTCCGCTGAGGACAAGTCTGTGGAAACATAAGCGGGCTAAGCATGGTATCATCAACCCGAATACTAGTGGCACTTCTGAAACTCAAACACAACCATCGAATGAATCTTCTAGTACGAGATCAAGCTGCACCATATGTAAAATAACATTTTTAGATAAAAAGTCATACTATCGCCACAGAAAGAACGTCCACAAATCATCCGTACAAATGTGTAAGATATGTGGAAAACCTTTGAATTCTACATTAGAACTTTACGAACATCTTAAAGCAGCACATGCGCGAGAGCTGTTGGGATACAACCCTAATCAAAGTTCCAGCAAATCGCAGGATATGAGTCAAGATATGGACGGAGAATATGATGGCGATCAAGATTCTATTGATCCTAGTGTTGATTATCAAGCGCGTTATCCATGCGACACTTGTGGCAAACAATTCGTTGGCTTACTGGCTCTACAAAATCATCAATGTATAAACCAAGTACAAAACCAGCCGCAAACGTTTGATTGTGAAATTTGCCACAAGAGTTACACTTCCATTGCGGCATTGAAAAGCCACCGAGGTTGGCATCTACGCTCTCCCGACGGTAAAGCCGCCGCCAACAATTCTGGTCTTTGGATGCCTCAGAATAAAGTTACGAGCAAGGTCAGCAAGCACGAAGTTGTTGAGAGCGCCCAAGTCACCCGTTCACAAACATCTACCCCGGCTAACATAGCCAAGAGACGATTGCCACCAGAGGTGGAAGTGACCGTTGTCAACCCCAATAAGAAGCTGCGATCGGATGATTCGGTCGAATTGGATCACCAGAACAGCTTGTCCGGTGGACCTGAAGATAAATATTGTAATCTTTGCGACAAAGAATTCACGAAACGAGCGGCGTATCAGCGTCACATGGATGAGGTACACCAACCCAACTCCGTATTTTGTCCAGTTTGTGACAAATCGTTTACACGAAAGTCTACATTAATCGTGCACATGAAGAAACATTATGACGGGGGAGAAGGAAGTTCTGGAACGCAAGCGGACGATGAAGCGCATGCGTGTGAAGTTTGCGGCGCTCAGTTCGAAAGCTCAAAAGCCTTGAATACTCACCGGTCAGTGGAACACGCCGAAGACTCGGGCGAGTCCGAGGACGACGGTGCTATCGCTCCTCCTGGGGAGTTCACTTGCAGCCAGTGCGGAGATGGTGTTGCCACTCCAAGAGATCTAATAGCCCACCGCTCGATGCACGCCACTCCTACCAAATTCTTTTGTAATATTTGTAAGGTTTACTTCGCCCGAGCTCTCGACCTATCCTCTCACACGCGAGCGAGGCACGCTGATAACGAAAAAGTGTTCTTCCCGTGCGCCATGTGTGACAGGTTTTATATGAATAAGAAGAGTTTACAACGACACATCGAGATGGCGCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPALASKIKDCVSVQISEYDDLPTNVCRKCMDNVNNWHIFKTVCEKSQNKLQSLINKESNLLEEVKVKNEPLSDEAYDDGVVIDGSYPDVENAGPSSKVQPEGPPILASLGLTPRSDKGMESEKDEDFEDEDELLEPHSFTNVPTMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKVTNKKTQTHMQPKFRPNPFNPKARLMPNPISHKMQFHSKSMPTKMIPHKVVAQPKPIPIKTPKVQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEILVSEPEIVNSGPESPETLISEPEIASFQVETILSEPDTFINQQREEDDENNQGQNYDTVDMDSENEIEIARQQENEEEDNENPTENDAEENVQEDNIQEENNIDENHDNEDKEDDNGESQDIDMENAENNIDADGEDDNAKEDYESQEKENEIVNNEENDEDDGEMPPMNIAPVVEINEDVQTNSYNSDNNINEEEMDETVDPNDTLDGDEKDLDPDKVYVTKTQRDFILKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVIEDEPKDSKAQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQTRVPHACVHCGLRFKDKSIGKKHIRNGDCTVYICCEICSEKFLNLQDFSDHAIAVHAGSFDPDSQNKCVDGRPTDCPICGKKNTSYPNLVKHLKCIHNEEKPHHCQHCDSKFEQTADLNKHIYMEHSDRTLGMSSEPDMSLVKEEADEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPQKLAEHVQQVHPGAGKIPVDSEFFCDICIRKFKSRQAYSNHMRIHAKVPTTNRKPEPKGFPPQIIGKPIRQYPMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDDYNIDENGTILSTPQFNSFNFTNLSNNMLQNSQDALPYSCELCFKRFPLRTSLWKHKRAKHGIINPNTSGTSETQTQPSNESSSTRSSCTICKITFLDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNPNQSSSKSQDMSQDMDGEYDGDQDSIDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVESAQVTRSQTSTPANIAKRRLPPEVEVTVVNPNKKLRSDDSVELDHQNSLSGGPEDKYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDGGEGSSGTQADDEAHACEVCGAQFESSKALNTHRSVEHAEDSGESEDDGAIAPPGEFTCSQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH