Basic Information

Insect: Heliconius charithonia
Gene Symbol: -
Assembly: GCA_030704555.1
Location: CM060827.1:8524676-8533299[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0038 0.29 12.2 1.0 3 23 209 230 208 230 0.96

2 22 0.037 2.8 9.1 0.6 1 22 622 643 622 643 0.95

3 22 5.3 4.1e+02 2.3 0.3 1 22 685 706 685 708 0.82

4 22 0.41 32 5.8 0.5 1 14 717 730 717 738 0.82

5 22 0.24 18 6.5 1.1 3 21 788 806 786 809 0.93

6 22 0.038 3 9.0 5.3 1 23 815 838 815 838 0.95

7 22 0.25 19 6.5 0.0 1 23 864 887 864 887 0.90

8 22 0.015 1.1 10.3 3.4 1 23 892 914 892 914 0.97

9 22 0.032 2.5 9.3 0.2 1 23 920 943 920 943 0.95

10 22 0.0018 0.14 13.2 1.3 1 23 955 977 955 977 0.97

11 22 0.0011 0.088 13.8 4.0 1 23 1020 1043 1020 1043 0.96

12 22 0.004 0.31 12.1 1.7 1 23 1103 1126 1103 1126 0.96

13 22 0.00096 0.074 14.1 2.3 2 23 1149 1171 1148 1171 0.95

14 22 0.069 5.3 8.2 0.1 2 23 1177 1199 1176 1199 0.93

15 22 0.0078 0.6 11.2 0.2 1 21 1243 1263 1243 1264 0.95

16 22 0.00097 0.075 14.0 0.6 1 23 1274 1296 1274 1296 0.93

17 22 7e-05 0.0054 17.7 0.3 2 23 1384 1406 1384 1406 0.93

18 22 1.4e-07 1.1e-05 26.1 1.1 3 23 1413 1433 1412 1433 0.98

19 22 0.0023 0.18 12.9 0.5 1 23 1450 1473 1450 1473 0.94

20 22 0.096 7.4 7.8 0.0 1 23 1496 1518 1496 1518 0.97

21 22 0.022 1.7 9.8 0.6 1 23 1524 1547 1524 1547 0.95

22 22 0.0002 0.016 16.2 0.4 1 23 1555 1578 1555 1578 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0038	0.29	12.2	1.0	3	23	209	230	208	230	0.96
2	22	0.037	2.8	9.1	0.6	1	22	622	643	622	643	0.95
3	22	5.3	4.1e+02	2.3	0.3	1	22	685	706	685	708	0.82
4	22	0.41	32	5.8	0.5	1	14	717	730	717	738	0.82
5	22	0.24	18	6.5	1.1	3	21	788	806	786	809	0.93
6	22	0.038	3	9.0	5.3	1	23	815	838	815	838	0.95
7	22	0.25	19	6.5	0.0	1	23	864	887	864	887	0.90
8	22	0.015	1.1	10.3	3.4	1	23	892	914	892	914	0.97
9	22	0.032	2.5	9.3	0.2	1	23	920	943	920	943	0.95
10	22	0.0018	0.14	13.2	1.3	1	23	955	977	955	977	0.97
11	22	0.0011	0.088	13.8	4.0	1	23	1020	1043	1020	1043	0.96
12	22	0.004	0.31	12.1	1.7	1	23	1103	1126	1103	1126	0.96
13	22	0.00096	0.074	14.1	2.3	2	23	1149	1171	1148	1171	0.95
14	22	0.069	5.3	8.2	0.1	2	23	1177	1199	1176	1199	0.93
15	22	0.0078	0.6	11.2	0.2	1	21	1243	1263	1243	1264	0.95
16	22	0.00097	0.075	14.0	0.6	1	23	1274	1296	1274	1296	0.93
17	22	7e-05	0.0054	17.7	0.3	2	23	1384	1406	1384	1406	0.93
18	22	1.4e-07	1.1e-05	26.1	1.1	3	23	1413	1433	1412	1433	0.98
19	22	0.0023	0.18	12.9	0.5	1	23	1450	1473	1450	1473	0.94
20	22	0.096	7.4	7.8	0.0	1	23	1496	1518	1496	1518	0.97
21	22	0.022	1.7	9.8	0.6	1	23	1524	1547	1524	1547	0.95
22	22	0.0002	0.016	16.2	0.4	1	23	1555	1578	1555	1578	0.96

Sequence Information

Coding Sequence: atgaATGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACTCCGAACCTCCTGTCCTCGCCTCGAAAATCAAAGATTGCGTGTCAGTGCAGataagCGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCTTGGACAATGTTAATAACTGGCATGTTTTCAAGACAATATGTGAAAGGACACAAAATAGGTTACAGTCTTTCATTAATAAGGACAGCAACCTACTAGAAGAGgtcaaaataaaaaatgaaccaATGTCAGATGAAGCCTATGATGATGGAGTGGTTATTGATGGATCATACCCTGACATTGAgaatGCTGGACcatcaaataaaatacaacctGAAGGTCCACCCATATTGGCTTCATTGGGACTCACACCGAGGAGTGATAAGGGTATGGAAAGCGAAAAAGAAGAGGATTATGAAGAGGAAGATGAACAAGAATTGCTAGAGCCTCGCTCATACACAAATGTACCAAATATGCCTGAAGTGTCGATCACAGTGATGCGCCCAACTGGAGAAACCTTGCACGCACGTCAAGGTATACAGCAGCTTGCGTCTAAGGACTGTCTAGTCTGTGGAAGATCCTACAGATACTCCCATAATGCAAGAAGACACGAGCTTACTGCTCACGGCTTTGATAGATACACAAATAAGGTCACAAACTTGAAATCTCGAGCTCACATGCAACCTAAGTTTAGACCTAATCCATTCAATCCAAAGGCGCGCCTCATGCCAAACCCAATTAGTCATAAAATGCAGTATCACCCCAAGTCCATGCCAAACAAAATGATACCCCATAAAGTTGTTGCACAACCAAAGCCAATACCTATTCGGACCGCAAAGACTCCTCAAAATAATTTACCGTATCCTCTTAGGATAAAAGCTCTAAAAGATttgcaaataaagaaaaaagaacctcaaattttaaaaactttattgacATCCAAACCTGAGGTGTTAGTTTCGGAACCCGAAATAATAAATTCGGGCCCAGAAAGTCCCGAAACATTGATTTCGGAACCTGAAATTGCCTCCTTCCAAGTAGAGACAATTCTGTCGGAGCCAGATACATTTGTTAATACACATCCGGATGATgaagatgaaaataatcaaGGGCAGAATTATGACACTGTTGACATGGATTCAGATAACGAAATTGAAATTGCACGACAGGAAGAAAATGAGAGACATGCAGAAGGGGAGGAAAACTGTGTGGAAATCGATGGCGATGATAATACACAAGACGAGAATAATTTACAAGAAAATCATGATGATATTGGAAAAGATGATCACAATGACAATGTTGAAAGTCAAGATGTTGATACGGAGAACAATGTTGACGGAGATGAGAATTACAATGACGCCAAAGAAAATGAGTATGAGAGTAATGACAAGGAAGGTGAAGCGATGAACCACGAAGAAAATGACGACGATGACGATCTACCTCCTATGAGTATTGCACCTGTCGttgaaataaatgaagaaaTTCAAACAAACTCCTATAATAGTGATGGAAATGAGGAAGAGTTAGACGAAACGGTTGACCCCAATGATACCGTCGACGGAGACGGTGAAGCCGACGGGGAGGGTGATGCTGAAGGGGAAGAAGGGGAAGGTGAAGATATAAAAGACCTTGATCCTAATAAAGTTTATGTGACGAAAACACAACGAGATTTTATACTCAAATATAGAGATATTATAGAACAAATCAATACTAAACGTTGTTTATGTTGTAATAAAGAGCATCCCCGCAGAAAAGCGGTCATTCAGCATTTGCAAAAGAATGGTCATAAAGTTCCTAAACATACATGCTACAATTGCGTTGTCACATTCACTCATATAGGAGCCTTATTAAGCCATATGCGATCAAACACGTGTACAGATCTATGGAAAATTATCTACAACGAAAATGGGATAACTGATGATATAGTACTGGAGGATGAACCCAAGGACTCGAAAGTTCAGTACAAGGACATCTTGAATGCGAGATCATATGCATGCAAGTTGTGTCCGgccaaatttcaattaaaacaatttattatgaaacatgTTCTCGATGTACATGAGGATGGGCAAACTCGCGTTCCTCATTCATGCGTGCACTGCGGTTTGCGTTTCAAAGATAAAGCTATAGGAAAGAGACACATTCGTAATGGAGAATGTACTGTTTATATTTCTTGTGATTTATGTTCTGAAAAGTTTTTGAATTTACAAGATTTCAATGATCATGCCATAGCGGTGCACGCAGGTAGTTTTGATCCCGACAGTCAGAGCAAGTGCGTCGACGGCCGTCCCACAGACTGTCCCATATGTGGAAAGAAGAACAACAGTTACCCTAATTTGGTGAAACATTTGAAGTGTATACACAACGAGGAGAAACCTCATCATTGTCAACATTGTGATTCCAAATTTGAGCAAACTGCTGATCTTAACAAGCACATTTATATGGAACACTCTGATAGGACGCTTGGAATGCAGACTTCCGAGCCTGATATGACTCTCGTAAAAGAAGAAGCAGAAGAGTACCATTACTCATGTACAGAATGCAATTCTATTTTTGAAACCGTCGATGCATGGACAGATCACCAGGTCGCTGAACACAATCAAGTGGCTCACCATTGTGATCAATGCGAGAAGAAATTTTTACGCCCGTCAGAACTTGCGGAGCATAAGAACACGCATTTAAGAGTTAAATTCTATCCTTGTAGTATTTGTACTAATTCTTACAGTACACCTCTAAAATTATCTGAACATGTACAGCAGGTCCACCCTGGAGCAGGGAAGACGCCAGGAGATACGGAATTCTTTTGTGACATTTGTATAAGATCATTCAAAAGCCGCCAAGCTTATTCCAATCATATGCGTATTCATGCGAAAGTGCCTACCACTAATAGAAAACCTGGGGAAAATAAAGGTTTTGCGCCACAAATTATAGGGAAGCCAATACGCCAGTTCTCTATGCAACCAGGTTTTAGTCCATATGTTCCAAATGCTCCTTATTGCTGTGATATTTGTGGAAAAGGATTTATGCACAAAAAGAATATATGGAAACATAAGAAGGTGCTACATGCAGATCTACTCGCTGATAGAAACGACAGCGAGGAGAACACAATGCAAGCATCTACTGAAGAAGATGAATACAATATTGATGAAAATGGCGCTATTTTGTCGACTCCGCAATTTAACAGTTTTAATTTCACTAATTTGTCGAATAATATGCAACAAACATCTCAAGATGCTTTACCATACTCTTGTGAATTATGCTACAAGAAGTTCCCCCTACGAACAAGTCTTTGGAAACACAAACGGGCAAAGCATGGAATTAATTCAAGTGCCGGTGCATCGGAAACTCAAACACAACCTTCCAACGAAGGCACGAGATCTAGCTGTACTATATGTAAAATAACCTTCACAGACAAAAAATCTTACTACCGTCACAGAAAAAATGTTCACAAATCATCAGTACAGATGTGCAAAATATGTGGAAAACCACTTAATTCGACGTTAGAACTTTACGAACATCTGAAGGCGGCGCACGCTCGGGAACTACTAGGGTATAATTCAAACCAGAGTTCAAGTAAATCACAAGACGTAAGTCAAGACATGGACGTGGAGGACGACGGAGATCACGACTCCGTCGATCCCAGCATCGACTACCAGGCACGATACCCCTGCGACACTTGTGGTAAACAGTTTGTGGGACTGTTAGCTTTACAGAACCATCAGTGTATAAATCAGATACAAAGCCAACCGCAAACATTTGATTGTGAAATATGTCACAAGAGCTACACTTCCATCGCGGCTCTGAAAAGTCACCGCGGCTGGCACTTGCGATCTCCCGACGGCAAGGCCGCTGCCAACAACTCGGGGCTTTGGATGCCTCAAAACAAGGTAACCAGCAAAGTCAGCAAACACGAAGTGGTTGACATTCCTCAAAATACGCGCTCATCGACATCAGCAAACTTAGCCAAGAGACGGTTACCGCCCGAAGTAGAAGTGACTGTAGTGAACCCAAATAAGAAATTACGATCTGACGATTCCATAGACTTGGATCATCAAAACAATTTTTCTGGAGGGCCAGAAGATAGATACTGTAATATTTGTGACAAGGAATTCACCAAGCGAGCCGCATACCAGCGTCACATGGACGAGGTGCACCAACCGAATTCTGTATTCTGTCCAGTTTGCGATAAGTCGTTTACACGAAAGTCCACCTTAATTGTACATATGAAGAAACATTACGAGGGCGGAGAGGGCAGCTCCGGCACGCAAATAGACGAGGACGTGCACGCGTGTGAAGTGTGCGGCGCGCAGTTCGACACCGCGAAGGATTTGAACACCCACCACGCGATGGAGCATGGGGACGAAGTGGACGACACGGGCGAATCTGACGACGACGGAGGAGCTGTGGCACAACCAGGGGAGTTCACTTGCGGCCAGTGCGGGGACGGGGTGGCGACCCCTCGCGACCTGATAGCTCACCGGACAATGCACTCCACACCCACTAAGTTCTTCTGCAACATATGCAAGGTCTACTTCGCGAGAGCGCTCGACCTGTCCTCGCACACGCGGGCGAGGCACTCCGACAACGAAAAAGTGTTCTTCCCTTGCGCCATGTGCGACCGGTTTTATATGAACAAAAAGAGTTTACAGAGACACATCGAGATGGCCCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPTNVCRKCLDNVNNWHVFKTICERTQNRLQSFINKDSNLLEEVKIKNEPMSDEAYDDGVVIDGSYPDIENAGPSNKIQPEGPPILASLGLTPRSDKGMESEKEEDYEEEDEQELLEPRSYTNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKVTNLKSRAHMQPKFRPNPFNPKARLMPNPISHKMQYHPKSMPNKMIPHKVVAQPKPIPIRTAKTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDTFVNTHPDDEDENNQGQNYDTVDMDSDNEIEIARQEENERHAEGEENCVEIDGDDNTQDENNLQENHDDIGKDDHNDNVESQDVDTENNVDGDENYNDAKENEYESNDKEGEAMNHEENDDDDDLPPMSIAPVVEINEEIQTNSYNSDGNEEELDETVDPNDTVDGDGEADGEGDAEGEEGEGEDIKDLDPNKVYVTKTQRDFILKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDEPKDSKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQTRVPHSCVHCGLRFKDKAIGKRHIRNGECTVYISCDLCSEKFLNLQDFNDHAIAVHAGSFDPDSQSKCVDGRPTDCPICGKKNNSYPNLVKHLKCIHNEEKPHHCQHCDSKFEQTADLNKHIYMEHSDRTLGMQTSEPDMTLVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPLKLSEHVQQVHPGAGKTPGDTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGENKGFAPQIIGKPIRQFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDEYNIDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCELCYKKFPLRTSLWKHKRAKHGINSSAGASETQTQPSNEGTRSSCTICKITFTDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNSNQSSSKSQDVSQDMDVEDDGDHDSVDPSIDYQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDIPQNTRSSTSANLAKRRLPPEVEVTVVNPNKKLRSDDSIDLDHQNNFSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSGTQIDEDVHACEVCGAQFDTAKDLNTHHAMEHGDEVDDTGESDDDGGAVAQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00897124;
90% Identity: iTF_00780420; iTF_00776172; iTF_00778904; iTF_00781196; iTF_00779661; iTF_00782004; iTF_00776860; iTF_00778171;
80% Identity: -