Nina001100.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365791.1:11153388-11161370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.011 1.2 10.6 0.9 3 23 206 227 205 227 0.92 2 23 0.25 26 6.4 0.3 1 22 603 624 603 624 0.95 3 23 4.8 5.1e+02 2.3 0.3 1 22 665 686 665 688 0.82 4 23 0.21 22 6.6 0.6 1 14 697 710 697 718 0.84 5 23 1.9 2e+02 3.6 0.1 3 23 727 748 725 748 0.89 6 23 0.018 2 9.9 0.1 3 23 768 789 766 789 0.94 7 23 0.074 7.9 8.0 6.3 1 23 795 818 795 818 0.95 8 23 0.09 9.6 7.8 0.0 1 23 844 867 844 867 0.90 9 23 0.013 1.4 10.4 3.4 1 23 872 894 872 894 0.97 10 23 0.00056 0.06 14.7 0.1 1 23 900 923 900 923 0.96 11 23 5.4e-05 0.0057 17.9 1.3 1 23 935 957 935 957 0.98 12 23 0.001 0.11 13.9 4.0 1 23 1000 1023 1000 1023 0.96 13 23 0.011 1.1 10.7 3.4 1 23 1073 1096 1073 1096 0.96 14 23 0.00079 0.084 14.2 2.1 2 23 1121 1143 1120 1143 0.95 15 23 0.062 6.6 8.3 0.1 2 23 1149 1171 1148 1171 0.93 16 23 0.0071 0.76 11.2 0.2 1 21 1215 1235 1215 1236 0.95 17 23 0.00033 0.035 15.4 0.6 1 23 1246 1268 1246 1268 0.94 18 23 6.1e-05 0.0065 17.7 0.4 2 23 1358 1380 1357 1380 0.93 19 23 1.3e-07 1.4e-05 26.2 1.1 3 23 1387 1407 1386 1407 0.98 20 23 0.0012 0.12 13.7 2.3 1 23 1424 1446 1424 1447 0.95 21 23 0.13 14 7.2 0.0 1 23 1469 1491 1469 1491 0.97 22 23 0.02 2.1 9.8 0.6 1 23 1497 1520 1497 1520 0.95 23 23 0.00018 0.019 16.2 0.4 1 23 1528 1551 1528 1551 0.96
Sequence Information
- Coding Sequence
- atgaATGTGAATTATGACCGTGTTTGTCGACTGTGCTTGTcatctagatgcgaattattaCCGATATTTCCTACCACCAGTTCGGATGATTTGGAACCTCCTGTCCTTGCTTCAAAGATTAATGATTGCGTGTCAGTGCAGATAAGCGAAAATGACGACCTGCCAACCAATGTCTGCAGGAAATGCATTGACAATGTCAATAACTGGCACATATTTAAGACAGTATGTGAAAGAAcacaaaacaaattacaatcatttttaaataaggaGAGTAACCAACTAGAAGAGgttaaaataaaaaatgaacctTTATCTGATGAAGCTTATGATGAAGGAGTGGTTATTGATGGATCATATCCTGATAGTGagAATGCTACTTCAGCAAGTAAAGTTCAGCCAGAGGGACCACCCATTTTGGCATCACTGGGGCTCACACCGAGAAGTGATAAGggGATGGATAGTGAAAAAGACGAGGATTACGAAGACGAGGAAGAAATGGATCAGCAACAATTTTCCAATGTTCCAAGTATGCCTGAAGTTTCAATAACTGTCATGAGACCTAGTGGTGAAACACTCCACGCTCGTCAAGGCATTCAAGAAATCGCCTCCAAAGATTGTCTCGTTTGCGGTCGGTCCTATAGATACTCTCATAATGCCCGAAGGCATGAACTTAACGCTCATAGTTTTGACAGATATACCAATAAAATAACCAATAAGAAATCTCAGTCACACATGCAACCAAAATTCAGACCAAACCCATTTAACCCTAAAGCTCGTTTAATGCCAAATCCGATTAGCCACAAAATGCAATTTAATTCTAAATCGATGTCGGGAAGAAATATGCAACAAAGAGTTGTTGCACCACCTAAACCAATTCCGATCAAAACATCTAAAGCTTCGCAAAATAACTTGCCATACCCGCTTCGTATTAAAGCCTTAAAAgatttacaaataaagaaaaaagaaccGCAAATTTTGAAAACATTGCTCACATCTAAACCTGAAGTGTTGGTATCTGAGcctgaaataattaattctgGTCCAGAAAGCCCCGAGACATTAATTTCCGAACCGGAAATAGCATCATTTCAAGTGGAGACAATTCTATCAGAGCCAGATGGATTTGCTAATCAACAACAAGAAGATGAGGAGATAGACAATGAAAACCAAGAGCAACATTATGATACTGTTGATATGGACTCTGATAACGAAATAGAAATTGCTCGACAGAATGAAAATGATGTAGATATTGATGAAAATCCTTTGATTGACAATGAAGACAACCAACATGACGAGGAAAACAATGTGGAGGAAGCTCAAGATGAAAATGACGGAGATGAACATGAGGATAACGATGATAGACAGGATGATTTAGTTAACAACGTAGACGCGGAAGGTGATGATAATGCCAAAGAAAGTCAAGATGATGACGCCGAGAAAGAGACTTACCAAAATATAAAGAATGAAGATAATGAAGAGGATGAAGAAATGCCAGCGTTAAACATAGCGCCAGTTGTTGAGATAAATGAAGACATGCAAACAAACTCGTATAACAGTGATGCAAATGAGGAAGAAGAAGCAGATGAAACCGTTGATCCCAACGACACAGTCGATGGTGATGAAGCAGAAAAAGACTTGGACCCAGATAAGGTGTACATCACTAAAACACaaagagattttattttaaaataccgtGATATCATTCAACAAATTAATACCAAACGGTGCCTTTGCTGTAATAAAGAACATCCACGAAGAAAAGCAGTTATACAACATTTACAGAAAAATGGACACAAGGTCCCAAAACATACTTGCTATAACTGCGTTGTTACTTTCGGACACATCGGTGCCTTGCTGAGCCACATGAGATCTAATACCTGCACGGATCTATGGAAAATCATTTATAACGAAAATGGCATAACCGATGATATAGTATTGGAAGATAAACCTGATAACAAAATCCCGTATAAAGATGTCGTCAATGCCAGGTCATATGCCTGTAAATTATGTCCAGCTAAATTTCAgcttaaacaatttataatgaaGCATGTATTAGATGTCCATGAAGATGGTCAGTCACGCGTTCCCTTTTCTTGTGTTCATTGTGGCATGAGatttaaagacaaaaatattGGAAAGAGACATATTCGCAATGGAGATTGCACTGTGTATATCGCTTGTGAATTATGTTCTGAGAAGTTCATGAACATGCAGGACTTCAATGATCATGCAGTTTCTGTACATGCTGGCAATTTGGATCCGGAAAATCAGACTAAATGTGTCGATGGTCGACCAACCGATTGTCCTGTTTGCGGCAAGAAGAATAGTAGCTATCCGAAtttagtaaaacatttaaaagctGTACACAATGAAGAAAAACCTCATCATTGCCAACACTGCGACTCTAAATTCGAACAAACTACTGATCTTAACAAGCACATCTATATGGAACATTCTGATAGAAGCTTGGGTATGCAATCTATTGAGCCTGACATGTCAATTGTCAAAGAAGAGGCTGAAGAATACCACTACTCTTGTACAGAATGCAATGCTATCTTTGAAACTGTAGATGCATGGACCGATCACCAAGTAGCTGAACATAACCAGGTCGCTCATCACTGCGATCAATGTGAAAAGAAATTTTTACGTCCATCGGAACTTGCAGAACATAAAAATACTCACTTAAGAGTTAAATTTTATCCTTGTGGCGTTTGTCCCAACTCTTACAGCACTCCCCAAAAACTAACAGAACACATGCAGCAAATGCATCCCGGGGCTACCACACGTGGAGGTGATAGTGATTTCTATTGCGATATATGTGTAAGATCATTCAAGAGTCGCCAAGCATACTCGAACCATATGCGTATCCACTCCAGGGTTCCAACTACTAACAGGAAACCAGGAGAATCTAAAGGATTTGCTCCTCAAATAGTTGGAAAACCCATAAAACAATTCTCTATGCAACCTGGATTCAGTCCATTTGTCCCAAATGCACCTTATTGCTGTGATATTTGCGGTAAAGGTTTCATGCACAAGAAGAACATATGGAAACATAAGAAAGTACTTCATGCTGATCTTCTTAATGATAGGAATGATAGTGAGGAAAATACTATGCATGCGTCTACTGAAGAAGATGAATATAATGTGGACGAAAATGGTGCAATCCTGTCAACTCCACAATTTAATAGTTTCAATTTTACCAATGACGCTTTACCATATTCTTGTGAAATTTGTTATAAACGATTCCCTCTCAGGACATGTTTGTGGAAACACAAACGCGCTAAGCACGGAATTTCCAATCCCAACGCTGGTGGTTCTTCGGAAACTCAAGCTCAACCATCATCGGCGGAGGGGAGATCGAGTTGCACCAtatgtaaaataactttttctgATAAAAAGTCATACTATCGTCATCGAAAAAATGTACACAAGTCGGTTGTCCAGATGTGCAAAATATGTGGAAAACCGTTGAACTCAACTTTAGAACTATATGAGCATCTCAAAGCAGCACATGCACGTGAATTGCTTGGTTACAATGCCAATCAGGGCCCTGGCAAGTCTCAGGATTCTGGACAAGAGATGGAAGTGGAATATGACGAAGACCAGGACTCAGCTGATCCAAGTGTCGACTACCAAGCTCGATACCCCTGCGACACATGTGGCAAGCAGTTTGTTGGGCTATTAGCTTTGCAGAACCATCAGTGTATAAATCAGGTTCAGTCACAGCCACAGACATTTGAATGTGAAATTTGTCACAAGAGTTATACGTCAATTGCCGCTTTGAAGAGCCATCGTGGATGGCATTTACGTTCACCTGACGGTAAAGCTGCCGCTAACAATACTGGACTATGGATGCCACAGAACAAGGTGACGACCAAAGTGAGCAAGCATGAAGTTGTAGATCCAGTCCAACTCGCGCGTGTTCAACATACGACGCCGGCCAGCATTGCCAAAAGAAGGTTACCACCAGAAGTAGAAATAACTGTTGTTAATCCTAATAAGAAGTTGCGGTCAGATGATTCCATCGAATTAGATCACCAGAACAACTCCTCCGGTGGACCTGAAGATAAATATTGCAACATCTGCGATAAGGAATTCACGAAACGGGCGGCTTACCAGCGCCACATGGACGAAGTGCATCAACCCAACTCTGTCTTTTGTCCCGTCTGTGATAAGAGTTTTACACGAAAATCTACTTTGATTGTTCACATGAAGAAGCATTATGAAACCGGCGAAGGAACTTCAGGCTCTCAAATAGATGAAGATTCGCACACTTGCGATGTTTGCGGTAGTGTCTTCGATAGCGCGAAATCTTTAATGTCTCATAAAAACATGCATCACGGCGAAGAAGAATCTGATCAGTCCGAAGACGATGGCGGAGCGACTATCCTGCCGCCTGGGGAATTCACCTGCGCTCAATGCGGGGATGGCGTGGCCACTCCACGAGATTTGATAGCCCACCGCACGATGCACGCCACTCCCACTAAGTTTTTCTGTAACATTTGTAAAGTATACTTCGCGAGGGCTCTAGACTTATCCTCTCACACGCGAGCCAGACACGCGGACAACGATAAAGTGTTCTTTCCGTGCGCGATGTGCGACCGCTTTTATATGAATAAGAAGAGCTTGCAACGCCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDLEPPVLASKINDCVSVQISENDDLPTNVCRKCIDNVNNWHIFKTVCERTQNKLQSFLNKESNQLEEVKIKNEPLSDEAYDEGVVIDGSYPDSENATSASKVQPEGPPILASLGLTPRSDKGMDSEKDEDYEDEEEMDQQQFSNVPSMPEVSITVMRPSGETLHARQGIQEIASKDCLVCGRSYRYSHNARRHELNAHSFDRYTNKITNKKSQSHMQPKFRPNPFNPKARLMPNPISHKMQFNSKSMSGRNMQQRVVAPPKPIPIKTSKASQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFANQQQEDEEIDNENQEQHYDTVDMDSDNEIEIARQNENDVDIDENPLIDNEDNQHDEENNVEEAQDENDGDEHEDNDDRQDDLVNNVDAEGDDNAKESQDDDAEKETYQNIKNEDNEEDEEMPALNIAPVVEINEDMQTNSYNSDANEEEEADETVDPNDTVDGDEAEKDLDPDKVYITKTQRDFILKYRDIIQQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDKPDNKIPYKDVVNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPFSCVHCGMRFKDKNIGKRHIRNGDCTVYIACELCSEKFMNMQDFNDHAVSVHAGNLDPENQTKCVDGRPTDCPVCGKKNSSYPNLVKHLKAVHNEEKPHHCQHCDSKFEQTTDLNKHIYMEHSDRSLGMQSIEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCGVCPNSYSTPQKLTEHMQQMHPGATTRGGDSDFYCDICVRSFKSRQAYSNHMRIHSRVPTTNRKPGESKGFAPQIVGKPIKQFSMQPGFSPFVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDEYNVDENGAILSTPQFNSFNFTNDALPYSCEICYKRFPLRTCLWKHKRAKHGISNPNAGGSSETQAQPSSAEGRSSCTICKITFSDKKSYYRHRKNVHKSVVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGPGKSQDSGQEMEVEYDEDQDSADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFECEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTTKVSKHEVVDPVQLARVQHTTPASIAKRRLPPEVEITVVNPNKKLRSDDSIELDHQNNSSGGPEDKYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYETGEGTSGSQIDEDSHTCDVCGSVFDSAKSLMSHKNMHHGEEESDQSEDDGGATILPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897124;
- 90% Identity
- iTF_01034833;
- 80% Identity
- -