Abis007586.2
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066616.1:12330508-12339897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0038 0.32 12.2 1.0 3 23 209 230 208 230 0.96 2 22 0.27 23 6.4 0.3 1 22 623 644 623 644 0.95 3 22 5.3 4.5e+02 2.3 0.3 1 22 686 707 686 709 0.82 4 22 0.2 17 6.8 2.5 1 21 718 738 718 739 0.92 5 22 0.11 9.3 7.6 1.1 3 21 789 807 787 810 0.93 6 22 0.027 2.3 9.5 4.3 1 23 816 839 816 839 0.95 7 22 0.25 21 6.5 0.0 1 23 865 888 865 888 0.90 8 22 0.015 1.3 10.3 3.4 1 23 893 915 893 915 0.97 9 22 0.0077 0.65 11.2 0.2 1 23 921 944 921 944 0.95 10 22 0.00023 0.019 16.0 1.3 1 23 956 978 956 978 0.97 11 22 0.0012 0.097 13.8 4.0 1 23 1021 1044 1021 1044 0.96 12 22 0.0034 0.29 12.4 1.6 1 23 1104 1127 1104 1127 0.96 13 22 0.00081 0.068 14.3 2.1 2 23 1152 1174 1151 1174 0.95 14 22 0.069 5.8 8.2 0.1 2 23 1180 1202 1179 1202 0.93 15 22 0.0079 0.66 11.2 0.2 1 21 1246 1266 1246 1267 0.95 16 22 0.00098 0.083 14.0 0.6 1 23 1277 1299 1277 1299 0.93 17 22 0.00021 0.018 16.1 0.4 2 23 1388 1410 1388 1410 0.93 18 22 1.4e-07 1.2e-05 26.1 1.1 3 23 1417 1437 1416 1437 0.98 19 22 0.026 2.2 9.5 0.1 1 23 1454 1477 1454 1477 0.94 20 22 0.096 8.1 7.8 0.0 1 23 1497 1519 1497 1519 0.97 21 22 0.022 1.8 9.8 0.6 1 23 1525 1548 1525 1548 0.95 22 22 0.00025 0.021 15.9 0.7 1 23 1556 1579 1556 1579 0.96
Sequence Information
- Coding Sequence
- atGAATGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACTCTGAACCTCCTGTCCTCGCTTCGAAAATCAAAGATTGCGTGTCAGTGCAGATAAGCGAAAATGACGAACTGCCAACTAATGTTTGCAGGAAATGTATGGACAATGTAAATAACTGgcacatttttaaaacaatatgtgAAAGGACACAAAACAAGTTACAGTCTCTGATTAATAAGGGGAGCAACCTACTAGAAGAGgttaaaataaaaaatgaaccaTTATCAGATGAAGCTTATCATGATGGAGTGGTTATCGATGGAACATATCCTGACATTGAGAACATTGGGCCATCACATAAAGTGCAGCCCGAAGGTCCACCAATATTGGCTTCATTGGGACTCACACCGAGGAGTGATAAGGGCATGGAAAGCGAGAAAGATGAAGATTATGAAGATGAAGAGGAACAAGAACTCTTAGAGCCTCACTCCTTTTCAAATGTTCCAAATATGCCTGAAGTTTCCATTACCGTGATGCGTCCGTCTGGAGAAACCCTTCACGCTCGCCAGGGCATACAACAACTTGCTTCCAAGGACTGTCTAGTTTGTGGTAGGTCTTACAGATATTCTCATAACGCAAGAAGACATGAACTCACAGCTCACGGCTTCGATAGATACACAAATAAGGTTACAAATTTAAAATCTCGTGCCCACATGCAACCTAAGTTTAGACCTAACCCGTTCAACCCGAAAGCACGCCTCATGCCAAATCCGATCAGCCACAAAATGCAATACCACCACACCAAGTCAATGCCAAACAAAATGATACCACACAAAGTTATTGCGCAACCAAAACCCATACCGATTAGAACCCCAAAAACTCCCCATAATAATTTACCCTACCCTCTTCGGATTAAAGCTTTAAAAGACttgcaaataaagaaaaaagaaccTCAAATTTTGAAAACTCTTCTAACGTCTAAACCAGAAGTTTTAGTTTCTGAACCTGAGATAATGAATTCGGGCCCTGAAAGTCCGGAAACGTTGATATCTGAACCAGAAATAGCATCTTTCCAAGTGGAGACTATTCTATCGGAGCCAGATACTTTTGTCAATACTAATCAGGAAGATGATGACGATGAAAATAATCATGGGCAAAACTACGATACTGTAGATATGGATTCTGAGAATGAAATAGAAATAGCCCGTCAGCAAGAGAATGATCGCGAAGTGGAAGAGAATCCTGCAGAAGTTGATGGAGAAGATAATACTCAAGATGAAAACAACATAGAAGAAAATCATGACgataatgaaaaacataatcaTGAAGACAATGGGGAGAGTCAAGATGTCGATATGGAAAACAATATAGACGGAGACGCTGATGATGATAACGCCAAAGAAAATGATTATGAGAATCATGAAAAAGATAATGAAATTATGAATCATGAAGAAAATGAAGAAGATGATGACTTACCTCCTATGAGTATTGCCCCTGTCGTCGAGATAAACGAAGATTTGCAAACTAACTCGTATAATAGTGACGGTAACGAGGAAGAGTTAGACGAAACTGTTGATCCCAATGATACAGTCGATGGTGACGGTGATGTTGAAGGAGAAGGTGAGGGTGAAGGTGAAGGAGAAGGTGATGGTGATGAAGTAAAAGACCTTGATCCTAACAAAGTATACGTCACTAAAACTCAACGAGACTTTATACTCAAGTATCGTGACATCATCGAACAAATAAACACGAAACGTTGTTTGTGCTGTCACAAAGAACATCCGCGTAGAAAGGCCGTCATTCAACACTTGCAAAAGAACGGCCATAAAGTTCCTAAACACACGTGCTATAATTGCGTAGTCACGTTTGGACACATTGGAGCCTTGCTCAGCCACATGAGATCTAACACGTGTACAGATCTgtggaaaataatttataatgaaaatggaATAACAGATGATATAGTATTGGAAGATGAACCCAAAGATTCCAAAGTTCAATATAAAGATATACTTAATGCTAGATCATATGCATGCAAATTGTGCCCGGCCAAGTTTCAACTAAAGCAATTCATTATGAAACATGTCCTTGATGTGCACGAAGATGGTCAATCTCGTGTTCCCCACTCGTGTGTGCACTGTGGTTTACgctttaaagataaaaatttcgGGAAAAGGCATATTCGAAATGGAGATTGTACCGTGTATATCTCTTGCGATTTATGTTCTGAAAAGTTTTTGAACTTACAAGATTTTAACGATCATGCAATAGCAGTACATGCGGGTAGCTTCGATCCCGACAACCAGAATAAGTGTGTCGACGGCAGACCTACAGATTGTCCCATATGTGGAAAGAAGAACACTAGTTACCCGAATTTGGTGAAACATTTGAAATGTATTCACAATGAGGAAAAGCCTCACCACTGCCAACATTGCGAAGCCAAATTTGAGCAAACTGCTGATCTTAACAAGCACATTTACATGGAACACTCTGATAGGACGCTAGGTATGCAGTCTTCTGAGCCTGACATGTCTCTTGTGAAAGAAGAAGCTGAAGAGTATCATTATTCGTGTACGGAATGCAATTCTATTTTTGAGACTGTCGATGCGTGGACGGACCACCAGGTCGCTGAACATAATCAAGTGGCCCACCATTGCGATCAGTGCGAAAAGAAATTCTTACGCCCATCAGAACTTGCAGAGCATAAGAATACACATTTAAGAGTTAAATTCTATCCGTGTAGTATATGTTCGAACTCATATAGCACGCCGCAAAAGTTATCGGAACACGTTCAACAGGTTCATCCTGGTGCAGGGAAAACACCCGGTGATTCGGAATTTTTCTGCGAAGTTTGTGTAAGATCGTTTAAGAGTCGACAAGCTTATTCTAACCATATGCGTATTCATGCAAAGGTGCCTACAACTAATAGGAAGCCTGGTGAAACTAAAGGATTTGCGCCTCAAATTATAGGGAAACCCATACGCCAGTTTTCCATGCAACCCGGATTTAGCCCATACGTTCCAAACGCACCTTATTGCTGTGATATTTGCGGCAAAGGATTCATGcacaagaaaaatatatggaaGCACAAAAAGGTCCTACACGCTGACCTTCTTGCTGACAGAAATGACAGTGAAGAGAACACAATGCAGGCGTCTACTGAAGAAGACGATTACAATGTTGATGAAAACGGCGCTATTTTGTCAACTCCGCAATTCAACAGTTTTAATTTCACTAATTTATCGAATAACATGCAACAAAGTTCCCAAGATGCTTTACCATACTCTTGCGAATTGTGTTACAAAAGATTCCCGTTAAGGACAAGCCTGTGGAAACACAAACGTGCCAAACATGGAATCATTAACGCGAGTGCTGGCAGTAGCTCTGAAACTCAAACGCAACCGCAAGGCGAAGGTACGAGATCCAGTTGCACCATATGTAAAATATCGtttacagacaaaaaatcatATTACCGTCACAGAAAGAATGTTCACAAATCGGCTGTACAGATGTGTAAAATTTGTGGAAAACCACTAAACTCGACGTTAGAGCTTTACGAGCATCTTAAAGCAGCGCACGCTCGGGAACTACTAGGCTATAATGCAAACCAAGGATCGAGTAAATCTCAAGATGTAAGCCAAGATATGGACGCAGAATATGACGGCGACCAGGACTCTGTGGATCCCAGTATCGATTACCAGGCGCGATACCCCTGCGATACTTGTGGAAAGCAATTTGTAGGTCTACTAGCCTTGCAAAATCATCAATGTATCAACCAAATTCAAAGCCAACCTCAAACTTTCGATTGCGAAATATGCCATAAGAGCTACACATCCATTGCTGCTCTCAAGAGCCACCGTGGGTGGCATTTACGCTCGCCCGACGGCAAGGCCGCAGCAAACAACTCTGGCCTATGGATGCCTCAGAATAAAGTTACGAGCAAAGTGAGCAAGCACGAAGTAGTTGACATTGTTCCAAATACCCGTGCATCGTCTACTCCAGCCAACTTGGCCAAAAGACGACTACCACCCGAAGTAGAAGTGACCGTAGTGAATCCCAACAAGAAACTACGGTCCGACGATTCCATAGAAATGGAGCACCAAAATAATTTATCTGGCGGTGCCGAAGACAGGTACTGCAATCTCTGCGACAAAGAATTCACTAAGCGGGCGGCGTATCAGCGTCACATGGACGAGGTTCATCAACCGAATTCTGTGTTCTGCCCAGTTTGCGACAAGTCGTTTACTCGAAAATCCACCTTAATTGTGCATATGAAGAAACATTACGAGGGCGGAGAAGGAAGTTCTGGGACCCAAATTGATGATGATGCGCATGCTTGTGAAGTTTGTGGTGCGCAGTTTGACAGTCTGATAGCTTTGAATTCCCACCGAGCGATGGAGCATGGCGAAGATTCCGGGGAGTCGGAAGACGATGGCGGTACAATAGCACCTCCAGGGGAGTTCACTTGTGGACAATGTGGAGATGGCGTAGCAACCCCACGGGATCTTATAGCTCATCGAACCATGCACGCGACCCCTACTAAGTTCTTTTGCAACATATGCAAGGTTTACTTCGCGAGAGCACTCGATCTATCTTCCCACACTCGAGCGAGGCACTCGGATAACGAAAAAGTCTATTTCCCCTGCGCCATGTGCGATCGGTTTTATATGAATAAGAAGAGTTTACAAAGACACATCGAAATGTCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDELPTNVCRKCMDNVNNWHIFKTICERTQNKLQSLINKGSNLLEEVKIKNEPLSDEAYHDGVVIDGTYPDIENIGPSHKVQPEGPPILASLGLTPRSDKGMESEKDEDYEDEEEQELLEPHSFSNVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKVTNLKSRAHMQPKFRPNPFNPKARLMPNPISHKMQYHHTKSMPNKMIPHKVIAQPKPIPIRTPKTPHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETILSEPDTFVNTNQEDDDDENNHGQNYDTVDMDSENEIEIARQQENDREVEENPAEVDGEDNTQDENNIEENHDDNEKHNHEDNGESQDVDMENNIDGDADDDNAKENDYENHEKDNEIMNHEENEEDDDLPPMSIAPVVEINEDLQTNSYNSDGNEEELDETVDPNDTVDGDGDVEGEGEGEGEGEGDGDEVKDLDPNKVYVTKTQRDFILKYRDIIEQINTKRCLCCHKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDEPKDSKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPHSCVHCGLRFKDKNFGKRHIRNGDCTVYISCDLCSEKFLNLQDFNDHAIAVHAGSFDPDNQNKCVDGRPTDCPICGKKNTSYPNLVKHLKCIHNEEKPHHCQHCEAKFEQTADLNKHIYMEHSDRTLGMQSSEPDMSLVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQVHPGAGKTPGDSEFFCEVCVRSFKSRQAYSNHMRIHAKVPTTNRKPGETKGFAPQIIGKPIRQFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDDYNVDENGAILSTPQFNSFNFTNLSNNMQQSSQDALPYSCELCYKRFPLRTSLWKHKRAKHGIINASAGSSSETQTQPQGEGTRSSCTICKISFTDKKSYYRHRKNVHKSAVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSQDVSQDMDAEYDGDQDSVDPSIDYQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDIVPNTRASSTPANLAKRRLPPEVEVTVVNPNKKLRSDDSIEMEHQNNLSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSGTQIDDDAHACEVCGAQFDSLIALNSHRAMEHGEDSGESEDDGGTIAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVYFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897124;
- 90% Identity
- iTF_00723345; iTF_00247410; iTF_00248316;
- 80% Identity
- -