Hmel004468.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel220003o:7430571-7434854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0028 0.19 12.3 1.0 3 23 58 79 57 79 0.96 2 22 0.027 1.9 9.2 0.6 1 22 471 492 471 492 0.95 3 22 1.5 1e+02 3.7 0.2 1 23 534 557 534 557 0.89 4 22 0.3 21 5.9 0.5 1 14 566 579 566 587 0.82 5 22 0.077 5.4 7.8 1.0 3 21 637 655 635 658 0.93 6 22 0.028 1.9 9.2 5.3 1 23 664 687 664 687 0.95 7 22 0.18 13 6.6 0.0 1 23 713 736 713 736 0.90 8 22 0.011 0.75 10.5 3.4 1 23 741 763 741 763 0.97 9 22 0.023 1.6 9.4 0.2 1 23 769 792 769 792 0.95 10 22 0.0013 0.093 13.3 1.3 1 23 804 826 804 826 0.97 11 22 0.00084 0.058 14.0 4.0 1 23 869 892 869 892 0.96 12 22 0.003 0.21 12.2 1.7 1 23 952 975 952 975 0.96 13 22 0.0007 0.049 14.2 2.3 2 23 998 1020 997 1020 0.95 14 22 0.05 3.5 8.4 0.1 2 23 1026 1048 1025 1048 0.93 15 22 0.0057 0.4 11.4 0.4 1 21 1092 1112 1092 1117 0.93 16 22 0.00071 0.049 14.2 0.6 1 23 1123 1145 1123 1145 0.93 17 22 5.1e-05 0.0035 17.8 0.3 2 23 1233 1255 1233 1255 0.93 18 22 1e-07 7.2e-06 26.3 1.1 3 23 1262 1282 1261 1282 0.98 19 22 0.0089 0.62 10.7 0.6 1 23 1299 1322 1299 1322 0.94 20 22 0.07 4.9 7.9 0.0 1 23 1345 1367 1345 1367 0.97 21 22 0.016 1.1 10.0 0.6 1 23 1373 1396 1373 1396 0.95 22 22 0.00015 0.01 16.4 0.4 1 23 1404 1427 1404 1427 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGCGAAAAAGAAGAGGATTATGAAGAGGAAGATGAACAAGAATTGCTAGAGCCTCGCTCTTACACAAATGTACCAAATATGCCTGAAGTATCGATCACGGTGATGCGGCCAACTGGGGAAACCTTGCACGCACGTCAAGGTATACAGCAACTTGCGTCCAAAGACTGCCTAGTCTGTGGAAGATCCTACAGATATTCTCATAATGCAAGAAGACATGAGCTTACTGCTCATGGCTTTGATAGATACACAAATAAGGTCACAAACTTGAAATCTCGAACACACATGCAACCTAAGTTTAGACCTAACCCATTTAATCCGAAGGCGCGCCTCATGCCAAACCCAATTAGTCATAAAATGCAGTATCACCCCAAGTCCATGCCAAACAAAATGATACCGCATAAAGTTGTTGCACAACCAAAGCCAATACCTATTCGGACCGCAAAAACTCCTCAAAATAATTTACCGTATCCTCTTAGAATAAAAGCTCTAAAAGATTTGCAAATAAAGAAAAAAGAACCTCAAATTTTAAAAACTTTATTGACTTCCAAACCTGAGGTGTTAGTTTCTGAACCGGAAATAATAAATTCGGGCCCAGAGAGTCCTGAAACATTGATTTCGGAACCCGAAATTGCGTCTTTCCAAGTAGAAGCAATTCTGTCGGAACCGGATACGTTTGTTAATACACATCCGGATGATGAAGATGAAAATAATCAGGGGCAGAATTATGACACTGTTGACATGGATTCAGATAACGAAATTGAAATTGCACGCCAGGAAGAAAATGAGAGAAATGAAGAAGGGGAGGAAAATTGTGTGGAAATCGATGGCGATGATAATACACAAGACGAGAATAATCTACAAGAAAATCATGACGATACTGGGAAAGATCATCACAATGACAATGTTGAAAGTCAAGATATTGATACGGAGAACAATGTTGATGGAGATGGTAATTACAATGACGCCAAAGAAAATGAGTATGAGAATAACGAAAAGGAGGGTGAAGCAATGAATCATGAAGAAAATGACGACGATGATGATCTACCTCCTATGAATATTGCGCCTGTCGTCGAAATAAATGAGGAGATGCAAACAAATTCTTATAATAGTGATGGAAATGAGGAAGAGTTGGACGAAACGGTTGACCCCAATGATACCGTCGATAGAGACGGTGAAGCTGACGGGGAGGGTGAAGCTGAAGGGGAAGAAGGGGAAGGTGAAGATACAAAAGATCTTGACCCCAATAAAGTTTACGTAACGAAAACACAACGAGATTTTATACTCAAATATAGAGATATTATAGAACAAATAAATACTAAACGTTGCTTATGTTGTAACAAAGAGCATCCCCGCAGAAAAGCGGTCATTCAACATTTGCAAAAGAATGGCCATAAGGTTCCTAAACATACATGCTATAATTGCGTTGTCACATTCACCCATATAGGAGCCTTATTAAGCCATATGCGATCAAATACGTGTACAGATCTGTGGAAAATTATCTACAACGAAAATGGGATAACTGATGATATAGTACTGGAAGACGAACCCAAGGACACGAAAGTTCAGTACAAGGACATCTTGAATGCGAGATCATATGCATGCAAGTTGTGTCCGGCCAAGTTTCAATTAAAACAATTTATTATGAAACATATTCTTGATGTACATGAGGATGGACAATCTCGCGTTCCTCATTCATGCGTGCACTGCGGTTTGCGTTTCAAAGATAAAGCTATAGGAAAAAGACACATTCGTAATGGAGAATGTACTGTTTATATTTCTTGTGATTTATGTTCCGAAAAGTTTTTAAATTTACAAGATTTCAATGATCATGCCGTAGCAGTGCACGCGGGTAGTTTCGATCCCGACAGTCAGAGCAAGTGCGTCGACGGCCGTCCCACAGACTGTCCCATATGTGGAAAGAAGAACAGCAGTTACCCTAATTTGGTAAAACATTTGAAGTGTATACATAACGAGGAGAAACCTCATCATTGTCAACATTGCGACTCCAAATTCGAGCAAACTGCTGATCTTAACAAGCACATCTATATGGAACACTCTGATAGGACGCTGGGCATGCAGTCTTCCGAGCCCGATATGACTCTCGTGAAAGAAGAAGCAGAAGAGTACCACTACTCGTGTACAGAATGCAACTCTATTTTTGAAACTGTCGATGCATGGACAGACCACCAGGTCGCTGAACACAATCAAGTAGCTCACCATTGTGATCAATGCGAGAAGAAATTTTTACGCCCGTCAGAACTTGCGGAGCATAAGAACACTCATTTAAGAGTTAAATTCTATCCTTGTAGTATTTGTACGAATTCTTACAGCACACCTTTAAAATTATCTGAACATGTACAGCAGGTCCATCCTGGAGCAGGTAAGACGCCAGGAGACACGGAATTCTTTTGTGACATTTGTATAAGATCATTCAAAAGCCGCCAAGCTTATTCTAATCATATGCGTATTCATGCGAAAGTGCCTACCACTAATAGAAAACCTGGAGAAAATAAAGGTTTTGCGCCCCAAATTATAGGGAAACCTATACGCCAGTTTTCTATGCAACCAGGTTTTAGTCCATATGTTCCAAATGCTCCTTATTGCTGTGATATTTGTGGAAAAGGATTTATGCACAAAAAGAATATATGGAAACATAAGAAGGTGCTACATGCCGATCTTCTCGCTGATAGAAACGACAGCGAGGAGAACACAATGCAAGCGTCTACTGAAGAAGATGAATATAATATTGATGAAAATGGCGCTATTTTGTCGACTCCGCAATTTAACAGTTTTAATTTTACAAATTTGTCTAATAATATGCAACAAACATCTCAAGATGCTTTACCATACTCTTGTGATTTATGCTACAAGAAGTTCCCTCTAAGAACCAGTCTTTGGAAACACAAACGGGCAAAGCACGGAATTAATGCGAGTGCTGGTACAACGGAAACTCAAACACAACCTTCCAATGAAGGCACGAGGTCTAGCTGCACTATATGTAAAATAACCTTCACAGACAAAAAATCTTACTACCGTCATAGAAAAAATGTTCACAAATCATCAGTACAGATGTGCAAAATATGTGGAAAGCCACTGAATTCGACATTAGAACTCTATGAACATCTGAAGGCAGCGCACGCTCGGGAACTGCTAGGTTATAATTCAAACCAGAGTTCAAATAAATCCCAAGACGTAAGTCAAGACATGGACGTGGAAGACGACGGAGATCAAGACTCTGTCGATCCCAGCATTGACTACCAGGCACGATACCCCTGCGACACTTGTGGAAAACAGTTTGTGGGACTGTTAGCTTTACAGAACCATCAGTGTATCAATCAGATTCATAGTCAACCACAAACATTTGATTGTGAAATATGCCACAAGAGCTACACTTCCATTGCGGCCCTGAAAAGTCACCGCGGCTGGCACTTGCGATCTCCTGACGGCAAGGCCGCTGCTAACAACTCGGGGCTTTGGATGCCTCAAAACAAAGTAACCAACAAAGTCAGCAAACACGAAGTCGTAGATATTGTTCAAAACACTCGCTCCTCGACATCAGCAAACTTAGCCAAGAGACGGTTACCGCCCGAAGTGGAAGTGACCGTAGTCAACCCTAATAAAAAATTACGATCTGACGATTCCATAGACTTGGATCATCAAAATAATTATTCTGGAGGGCCAGAAGACAGGTACTGTAATATTTGTGATAAGGAGTTCACCAAGCGAGCTGCATACCAGCGCCACATGGACGAGGTGCACCAGCCGAACTCTGTATTCTGTCCAGTTTGCGACAAGTCGTTTACACGAAAATCCACCTTAATTGTACATATGAAGAAACATTACGAGGGCGGCGAGGGCAGCTCCGGCACACAAATAGATGAGGACGTCCACGCGTGTGAAGTGTGCGGCGCGCAGTTCGACACCGTGAAGGATTTGAACACCCACCACGCGATGGAGCATGGGGACGAGGCGGACGACACGGGGGAGTCTGAGGACGACGGAGGAGCTGTGGCACCACCTGGAGAGTTCACTTGCGGCCAGTGCGGAGACGGGGTGGCGACCCCTCGCGACCTGATAGCTCACAGGACAATGCACTCGACTCCCACCAAGTTCTTCTGCAACATATGCAAGGTTTACTTCGCGAGAGCCCTCGACCTGTCGTCGCACACGCGGGCGAGGCACTCTGATAACGAAAAAGTGTTTTTCCCTTGCGCCATGTGCGACCGGTTTTATATGAACAAAAAGAGTTTACAGAGACACATCGAGATGGCCCACTGA
- Protein Sequence
- MESEKEEDYEEEDEQELLEPRSYTNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKVTNLKSRTHMQPKFRPNPFNPKARLMPNPISHKMQYHPKSMPNKMIPHKVVAQPKPIPIRTAKTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDTFVNTHPDDEDENNQGQNYDTVDMDSDNEIEIARQEENERNEEGEENCVEIDGDDNTQDENNLQENHDDTGKDHHNDNVESQDIDTENNVDGDGNYNDAKENEYENNEKEGEAMNHEENDDDDDLPPMNIAPVVEINEEMQTNSYNSDGNEEELDETVDPNDTVDRDGEADGEGEAEGEEGEGEDTKDLDPNKVYVTKTQRDFILKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDEPKDTKVQYKDILNARSYACKLCPAKFQLKQFIMKHILDVHEDGQSRVPHSCVHCGLRFKDKAIGKRHIRNGECTVYISCDLCSEKFLNLQDFNDHAVAVHAGSFDPDSQSKCVDGRPTDCPICGKKNSSYPNLVKHLKCIHNEEKPHHCQHCDSKFEQTADLNKHIYMEHSDRTLGMQSSEPDMTLVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPLKLSEHVQQVHPGAGKTPGDTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGENKGFAPQIIGKPIRQFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDEYNIDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCDLCYKKFPLRTSLWKHKRAKHGINASAGTTETQTQPSNEGTRSSCTICKITFTDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNSNQSSNKSQDVSQDMDVEDDGDQDSVDPSIDYQARYPCDTCGKQFVGLLALQNHQCINQIHSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKHEVVDIVQNTRSSTSANLAKRRLPPEVEVTVVNPNKKLRSDDSIDLDHQNNYSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSGTQIDEDVHACEVCGAQFDTVKDLNTHHAMEHGDEADDTGESEDDGGAVAPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897124;
- 90% Identity
- iTF_00775435;
- 80% Identity
- -