Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992247.1:4612282-4620628[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0032 0.29 12.2 1.0 3 23 207 228 206 228 0.96

2 22 0.031 2.7 9.1 0.6 1 22 608 629 608 629 0.95

3 22 4.5 4e+02 2.3 0.3 1 22 671 692 671 694 0.82

4 22 0.87 76 4.6 0.8 1 14 703 716 703 724 0.79

5 22 0.004 0.36 11.9 0.1 3 23 774 795 772 795 0.96

6 22 0.0068 0.6 11.2 4.4 1 23 801 824 801 824 0.95

7 22 0.084 7.4 7.7 0.0 1 23 850 873 850 873 0.90

8 22 0.013 1.1 10.3 3.4 1 23 878 900 878 900 0.97

9 22 0.021 1.8 9.7 0.4 1 23 906 929 906 929 0.95

10 22 0.0053 0.47 11.5 1.6 1 23 941 963 941 963 0.97

11 22 0.00097 0.086 13.8 4.0 1 23 1006 1029 1006 1029 0.96

12 22 0.0029 0.25 12.4 1.6 1 23 1089 1112 1089 1112 0.96

13 22 0.00074 0.065 14.2 2.1 2 23 1136 1158 1135 1158 0.95

14 22 0.058 5.2 8.2 0.1 2 23 1164 1186 1163 1186 0.93

15 22 0.0067 0.59 11.2 0.2 1 21 1230 1250 1230 1251 0.95

16 22 0.00083 0.073 14.1 0.6 1 23 1261 1283 1261 1283 0.93

17 22 0.00018 0.016 16.2 0.4 2 23 1374 1396 1374 1396 0.93

18 22 1.2e-07 1.1e-05 26.1 1.1 3 23 1403 1423 1402 1423 0.98

19 22 0.046 4.1 8.6 0.2 3 23 1441 1461 1440 1462 0.94

20 22 0.081 7.2 7.8 0.0 1 23 1483 1505 1483 1505 0.97

21 22 0.018 1.6 9.8 0.6 1 23 1511 1534 1511 1534 0.95

22 22 0.00021 0.019 15.9 0.7 1 23 1542 1565 1542 1565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0032	0.29	12.2	1.0	3	23	207	228	206	228	0.96
2	22	0.031	2.7	9.1	0.6	1	22	608	629	608	629	0.95
3	22	4.5	4e+02	2.3	0.3	1	22	671	692	671	694	0.82
4	22	0.87	76	4.6	0.8	1	14	703	716	703	724	0.79
5	22	0.004	0.36	11.9	0.1	3	23	774	795	772	795	0.96
6	22	0.0068	0.6	11.2	4.4	1	23	801	824	801	824	0.95
7	22	0.084	7.4	7.7	0.0	1	23	850	873	850	873	0.90
8	22	0.013	1.1	10.3	3.4	1	23	878	900	878	900	0.97
9	22	0.021	1.8	9.7	0.4	1	23	906	929	906	929	0.95
10	22	0.0053	0.47	11.5	1.6	1	23	941	963	941	963	0.97
11	22	0.00097	0.086	13.8	4.0	1	23	1006	1029	1006	1029	0.96
12	22	0.0029	0.25	12.4	1.6	1	23	1089	1112	1089	1112	0.96
13	22	0.00074	0.065	14.2	2.1	2	23	1136	1158	1135	1158	0.95
14	22	0.058	5.2	8.2	0.1	2	23	1164	1186	1163	1186	0.93
15	22	0.0067	0.59	11.2	0.2	1	21	1230	1250	1230	1251	0.95
16	22	0.00083	0.073	14.1	0.6	1	23	1261	1283	1261	1283	0.93
17	22	0.00018	0.016	16.2	0.4	2	23	1374	1396	1374	1396	0.93
18	22	1.2e-07	1.1e-05	26.1	1.1	3	23	1403	1423	1402	1423	0.98
19	22	0.046	4.1	8.6	0.2	3	23	1441	1461	1440	1462	0.94
20	22	0.081	7.2	7.8	0.0	1	23	1483	1505	1483	1505	0.97
21	22	0.018	1.6	9.8	0.6	1	23	1511	1534	1511	1534	0.95
22	22	0.00021	0.019	15.9	0.7	1	23	1542	1565	1542	1565	0.96

Sequence Information

Coding Sequence: ATGGATGTGAATTATAATAGTGTTTGTAGACTGTGCTTGTCATCTCGATGTGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACACGGAACCTCCTGTCCTCGCCTCGAAAATTAAAGATTGCGTGTCAGTGCAGATAAACGAAAATGACGACCTGCCAACTAATGTCTGTAGGAAATGCATGGATAATGTTAATAACTGGCACATATTTAAGACTGTGTGTGAAAGGACACAAAACAAGTTAGAGTCTCTTTTGAATAAGGACAGCAACCAACTAGAAGAGGTGAAAATAAAAAGTGAACCCTTATCAGATGAAGCTTATGATGATGGAGTGGTTATTGATGGATCATATCCTGATAGTGAGAATGCCTCATCAAGTAGATTGCAACCTGAAGGGCCACCTATTTTGGCTTCACTGGGGCTCACACCGAGAAGTGATAAGGGAATGGAGAGTGAGAAAGATGAAGAATATGAAGACGAGGAAGAAATGATGCAGCCACAGCAAACATTCACACACATGCCTAACATGCCTGAAGTTTCGATTACTGTCATGCGCCCATCAGGAGAAACTCTTCATGCTCGTCAAGGTATTCAGCAGCTTGCGTCAAAGGATTGCTTAGTGTGCGGCCGATCCTACAGGTATTCTCACAATGCTCGGCGACATGAACTTACTGCTCATAATTTCGATAGATACACAAACAAGATTGGTACAAAGAAATCTCACGCCCACATGCAACCAAAATTCAGGCCGAACCCATTTAACCCTAAGGCTAGATTAATGCCAAATCCTATAAGCCACAAAATGCAATTTCATTCTAAATCAATGCCCCCTAAAATGATGCCTCAGAAGATCGTTGCACCACCAAAGCCTATACCAATAAGAACAGGGAAAAATTCCCAAAACAATTTACCATATCCCCTTCGCATAAAGGCTCTTAAAGATTTGCAAATTAAGAAAAAAGAACCTCAAATTTTAAAGACATTATTAACTGCAAAGCCAGAAGTCTTAGTATCTGAACCTGAAATAATTAATTCGGGACCGGAAAGTCCAGAAACATTAATTTCGGAGCCAGAGATTGCTTCATTTCAAGTGGAAGCTATTTTATCAGAGCCAGATGGTTATGTTAATCAACATGAAGATGACGAAATTGATGATGAAAACAATCAAGGACAGAATTATGATACTGTTGACATGGATTCAGAAAATGAGATCGAGATAGCTCGCCAGCAAGAAAATGACATCCAAGGTGAAAATCACGAAGTTAATGATGCTGAATATAATACTCATGAAGATGAAAATAACATGGTGGAGGCAAATGATCATAACGAAAAAGAGAATCGTGAAGATAATGGCGAGAGTCAAGATAATATGGATATAGATAATAATATTGCGGAAGAAGTCGACGCAGACGACGATAATGCCAAAGAAATTGATGATGAAAACGGTGAAAAAGAAAATGATGAACAAAACATCAATCATGAAGAAAATGAGGACGATGACGATTTGCCACCTATGAGTATAGCACCCGTTGTTGAGATTAACGAGGATTTGCAAACAAATTGTTATAATAGTGATGGTAATGAAGAACTTGATGAAACCGTAGATCCAAATGATGCCGTAGATGGCGATGAAGGTGAAAAAGAAATTGATCCCGATAAAGTTTATATTACGAAGACGCAAAGAGATTTTATTCTCAAATATCGTGATATTATACAACAAATTAATACTAAACGCTGCATTTGCTGTAACAAAGAACACCCTCGTCGAAAAGCAGTTATACAACATCTACAGAAAAATGGACATAAAGTTCCTAAGCATACATGTTACAATTGTGTGGTCACTTTTACACATATAGGAGCTCTGCTCAGTCACATGAGATCTAATACTTGTACTGATCTTTGGAAAATAATATATAATGAAAACGGTATCACTGATGATATAGTTTTAGAAGTTGAACCTAAAGACGTCAAAGTTCAATACAAAGATATACTTAATGCTAGATCTTACGCATGTAAATTGTGCCCAGCGAAATTTCAATTAAAGCAGTTCATTATGAAGCATGTTCTTGATGTACATGAAGACGGTCAATCTCGTTTCCCTCATTCTTGCGTGCATTGTGGTTTACGATTTAAAGAGAAAAGTATAGGAAAGAGACACATACGCAATGGAGATTGCACAGTCGAAATATGCTGTGAGTTATGTTCAGAAAAATTTTTGAGCTTGCAAGAATTTAATGACCATGCTGTAGCTATACATGCAGGCAGCTTTGATCCTGATAATCAGAGCAAGTGTGTCGACGGTCGACCCACAGATTGTCCTATATGTGGTAAGAAGAATAGTAGTTACCCGAATTTGGTTAAACATTTGAAAATAATACATAATGAGGAAAAACCTCATCACTGCCAACATTGTGATGCTAAATTCGAGCAAACTGCTGATCTTAACAAACACATCTATATGGAACATTCTGATAGATCTTTAGGTATGCATACTAATGAACCTGATATATCTCTTGTAAAAGAGGAAGCTGAGGAGTATCACTATTCTTGCACAGAATGTAATGCGATATTTGAAACTGTCGACGCTTGGACGGATCATCAGGTAGCGGAACACAATCAAGTCGCTCATCATTGCGACCAATGCGAGAAGAAATTCTTGCGTCCATCAGAACTTGCGGAGCATAAAAATACACACTTGCGAGTTAAATTCTATCCTTGTAGTCTCTGTACGAACTCATACAGTACTCCTCAAAAGTTATCTGAGCATGTCCAGCAATCCCATCCGGGGGCGAACACGCGGGGTGGTGAAACTGAATTTTTCTGCGACTTATGTATACGATCATTTAAAAGTCGCCAAGCATATTCTAATCATATGCGTATTCATTCCAAAGTGCCTACCACTAATAGAAAGCCTGGAGAAACTAAAGGTTTCGGGCCTCAAATCATCGGAAAACCAATTCGTCATTTCTCAATGCAACCTGGTTTTAGTCCTTATGTTCCTAACGCACCTTATTGCTGTGATATTTGCGGTAAAGGATTCATGCACAAGAAAAATATATGGAAACACAAAAAGGTGCTGCATGCGGATCTTCTTAATGATAGGAACGATAGTGAGGAGAACACTATGCAAGCGTCCACCGAGGAAGATGATTACAATGTCGATGAAAACGGTGCGATTTTGTCGACTCCACAATTTGACAGTTTTAATTTCACAAATCTTTCAAACAATATGCAACAGACCTCACAAGACGCTTTGCCATATTCCTGTGAATTGTGTTACAAAAGGTTTCCGCTTCGCACTAGTTTATGGAAGCACAAACGCGCTAAACATGGAATTATAAATGCCAGTGCAAGTGGTGCTTCTGAAACCCAAACACAATCTTCGAATGAAGGAAGATCGAGCTGTACTATTTGTAAAATAACTTTTTCAGATAAAAAATCGTATTATCGTCATAGAAAAAATGTCCACAAGTCTACCGTTCAAATGTGTAAAATATGCGGAAAACCGCTTAACTCGACCTTAGAACTTTATGAACATCTGAAAGCGGCACATGCCAGAGAGCTTCTGGGTTATAATGCGAATCAAAGTTCAAGCAAATCACAAGAATTGAATCAAGAATTGGATATAGAATACGACGGTGATCAAGATTCAGTCGATCCCAGCGTTGATTATCAAGCGCGCTATCCCTGCGACACGTGTGGAAAACAGTTTGTCGGATTGTTGGCTTTACAAAACCATCAATGTATCAACCAGATACAGAATCAACCGCAAACGTTCGATTGTGAAATATGTCACAAGAGTTATACTTCTATTGCTGCCTTAAAGAGCCACCGAGGCTGGCACCTACGTTCCCCTGATGGTAAAGCCGCAGCAAATAATTCTGGACTTTGGATGCCTCAAAACAAAGTAACTAGTAAAGTGAGTAAACACGAAGTAGTGGATGCTGCTCCAGTTCCTCCTAAAACATCAACTTCGACTCCAGCCTCGTTGGCTAAAAGGAGATTGCCACCTGAAGTAGAAGTGACTGTCGTTAACCCGAATAAAAAATTGAGATCGGACGATTCTATCGAAATGGATCATCAGAACAATTTATCAGGGGGTGCCGAAGACAGATACTGCAACCTTTGCGATAAAGAATTTACAAAACGAGCGGCATACCAGCGTCACATGGACGAAGTTCATCAGCCGAACTCTGTGTTTTGCCCCGTTTGCGACAAGAGCTTTACGCGGAAATCTACATTGATCGTGCATATGAAGAAGCACTACGAGGGCGGGGAAGGAAGTTCTACACAAATGGAGGAAGACGTACAAGCGTGCGAAGTCTGTGGTGCCCAATTCGATAGTGTGAAGGCTTTAAATTCACATCGGGCTTTGCATCACGGCGAAGATTCCGCCGAGTCCGAGGACGACGGCGAAGTGATACCCGCGCCCCCCGGCGAGTTCACGTGCGGACAGTGCGGCGACGGCGTGGCCACCCCACGCGACTTGATCGCTCACCGAACGATGCACGCCACTCCCACTAAATTCTTTTGTAATATCTGCAAGGTTTATTTTGCCCGAGCTCTTGATTTGTCCTCCCACACACGAGCAAGACACTCCGACAACGAGAAAGTATTCTTCCCGTGTGCTATGTGCGACCGGTTCTATATGAACAAGAAGAGTTTGCAAAGGCACATCGAAATGTCGCACTGA
Protein Sequence: MDVNYNSVCRLCLSSRCELLPIFPTTSSDDTEPPVLASKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLESLLNKDSNQLEEVKIKSEPLSDEAYDDGVVIDGSYPDSENASSSRLQPEGPPILASLGLTPRSDKGMESEKDEEYEDEEEMMQPQQTFTHMPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKIGTKKSHAHMQPKFRPNPFNPKARLMPNPISHKMQFHSKSMPPKMMPQKIVAPPKPIPIRTGKNSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDGYVNQHEDDEIDDENNQGQNYDTVDMDSENEIEIARQQENDIQGENHEVNDAEYNTHEDENNMVEANDHNEKENREDNGESQDNMDIDNNIAEEVDADDDNAKEIDDENGEKENDEQNINHEENEDDDDLPPMSIAPVVEINEDLQTNCYNSDGNEELDETVDPNDAVDGDEGEKEIDPDKVYITKTQRDFILKYRDIIQQINTKRCICCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEVEPKDVKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRFPHSCVHCGLRFKEKSIGKRHIRNGDCTVEICCELCSEKFLSLQEFNDHAVAIHAGSFDPDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCQHCDAKFEQTADLNKHIYMEHSDRSLGMHTNEPDISLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSLCTNSYSTPQKLSEHVQQSHPGANTRGGETEFFCDLCIRSFKSRQAYSNHMRIHSKVPTTNRKPGETKGFGPQIIGKPIRHFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDDYNVDENGAILSTPQFDSFNFTNLSNNMQQTSQDALPYSCELCYKRFPLRTSLWKHKRAKHGIINASASGASETQTQSSNEGRSSCTICKITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSSKSQELNQELDIEYDGDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDAAPVPPKTSTSTPASLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHQNNLSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTQMEEDVQACEVCGAQFDSVKALNSHRALHHGEDSAESEDDGEVIPAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00897124;
90% Identity: iTF_01079235;
80% Identity: -