Dhaw015221.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila hawaiiensis
Gene Symbol
-
Assembly
GCA_037043685.1
Location
JBAMBA010000250.1:3996081-3997714[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.7e-16 5.8e-13 48.3 0.0 2 45 356 399 355 399 0.95
2 3 0.06 93 2.8 0.0 28 37 429 438 428 443 0.90
3 3 8.2e-20 1.3e-16 60.0 0.0 2 42 465 505 464 507 0.96

Sequence Information

Coding Sequence
ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGTAACAATCAAAGCTGCGAGGTCCTGTTGGTGGCCAAAGATGGCATCAGTGTGCGTGCCCATTTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGTCAGGAAGCAACAGTCATCCTGCCCGACATACGCGGCGAGCTGCTGGAGAGCATGCTGTCTTTCATTTATATGGGTGAAACGAGTTTGccctctgctctgctctccgAATTCCTCGAAGCCATCAATCTGCTGGGCATCAAGTCTGCCATTAGTTTTGAAACGAATCCAATAGCCATGACCAGTACAGATGTGATCAGCGGCGCTATGGCCATCGAGGCAGCAAAGTCAATTAGTGgattacaaattgcaaatgcatcgcttgtcgaggaggaggaggaagaggatgCTGGCGCGGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCTAAtccccagcagcaacatcaacagcaacagcatcacgATCAGCAGCAGGGACGAACGTTAGAGTTTCTTGATGTATACAGTGATCAGCCGAAAATAACATATTCCATTGAGCATATGGGCGGCACTAGCAATGGCAATCAGTATATATTAACGGAGAACACGGGCACCTTCACCATTACACAATCGGCATCTTCCGTGAATAAATTGGGTGATACAGTTAATCCCGTAATGGACACAGCGACGCACAGCGGTGAACTGGTTGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGAATCCGAATCCCAGTTAATCGAGGAAGAGTACGGGGCATCCGCGGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGATGTGATGCATGAAGTGGGTGTCggcgacgaggaggaggacgatGAAGAACTGCTGGATGTGAAACCACGCAAATCCCACCTagacataaaaatgttaaaaacaaaGATACGCCAGCGCGCCACGCCCACAAAGGAGCTCAAGGAAGATATCAATGATGCCCTTGATCTGGCCGCAGACGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTATCGGAGGCCTACGAGCGTCTGAAGAAAGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCACATACCGATGTCAACGCTGCATAGGCACAAGGTACGCTTGGCGGCCCAAGGACGACTGCCCGACTTCGTTGCCTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCATTACATGCCTGCATCAGCGGGGGCATGTCACAGAACCATGCCGCACATCTCTTCGAAATACCCAAGAGCACACTTTGGCGACATTTACAGCGACGCGTCACCGAAGCTGAGCGAAAAGTcaaggaggagcaggaggaggacgACGAGGAGGATGGGCTTAactaa
Protein Sequence
MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTDVISGAMAIEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQHQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQYILTENTGTFTITQSASSVNKLGDTVNPVMDTATHSGELVDDEVEADVTDDHDESESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGVGDEEEDDEELLDVKPRKSHLDIKMLKTKIRQRATPTKELKEDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKKGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAAHLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00517093; iTF_00598979; iTF_00576449; iTF_00500227; iTF_00557126; iTF_00576264; iTF_00485961; iTF_00500426; iTF_00616299; iTF_00498255; iTF_00542545; iTF_00485779; iTF_00598803; iTF_00616117; iTF_00498070; iTF_00501910; iTF_00542359; iTF_00553143; iTF_00557305; iTF_00552954; iTF_00501723; iTF_01325028; iTF_01320387; iTF_01324820; iTF_01320573; iTF_01328001; iTF_01327809; iTF_01321112; iTF_01321300; iTF_00495237; iTF_00619973; iTF_00606982; iTF_00619759; iTF_00495029; iTF_00607191; iTF_01322760; iTF_01322563; iTF_00498985; iTF_00498789; iTF_00535435; iTF_00543663; iTF_00543855; iTF_00511194; iTF_00535230; iTF_00511392; iTF_01323500; iTF_01323299; iTF_01327084; iTF_01327274; iTF_01325584; iTF_01325774; iTF_00560403; iTF_00560177; iTF_00497519; iTF_00496515; iTF_00610020; iTF_00496741; iTF_00597511; iTF_00609799; iTF_00521512; iTF_00528171; iTF_00573968; iTF_00558580; iTF_00497302; iTF_00521270; iTF_00558838; iTF_00574171; iTF_00527966; iTF_00597279; iTF_01322037; iTF_01321842; iTF_01324250; iTF_01326314; iTF_01326525; iTF_01324030; iTF_00552224; iTF_00552422;
90% Identity
iTF_00517093; iTF_00598979; iTF_00576449; iTF_00500227; iTF_00557126; iTF_00576264; iTF_00485961; iTF_00500426; iTF_00616299; iTF_00498255; iTF_00542545; iTF_00485779; iTF_00598803; iTF_00616117; iTF_00498070; iTF_00501910; iTF_00542359; iTF_00553143; iTF_00557305; iTF_00552954; iTF_00501723; iTF_00498985; iTF_00498789; iTF_00514283; iTF_00570498; iTF_00566917; iTF_00548935; iTF_00593225; iTF_00522090; iTF_00577163; iTF_00570317; iTF_00522319; iTF_00514098; iTF_00548725; iTF_00566709; iTF_00576981; iTF_00593013; iTF_00525046; iTF_00525271; iTF_00583065; iTF_00582880; iTF_00535435; iTF_00543663; iTF_00543855; iTF_00511194; iTF_00535230; iTF_00511392; iTF_00564571; iTF_00564760; iTF_00495237; iTF_00619973; iTF_00606982; iTF_00619759; iTF_00495029; iTF_00607191; iTF_00497519; iTF_00496515; iTF_00610020; iTF_00496741; iTF_00597511; iTF_00609799; iTF_00499688; iTF_00521512; iTF_00596041; iTF_00528171; iTF_00573968; iTF_00499505; iTF_00518545; iTF_00558580; iTF_00497302; iTF_00521270; iTF_00558838; iTF_00518360; iTF_00574171; iTF_00595867; iTF_00527966; iTF_00597279; iTF_00560403; iTF_00560177; iTF_00482361; iTF_00482151; iTF_00513567; iTF_00513377; iTF_00552224; iTF_00552422;
80% Identity
iTF_00517093;