Shsu014123.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- -
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000307.1:8174920-8176635[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-16 6.1e-13 48.4 0.0 2 43 375 416 374 418 0.93 2 3 0.038 1.1e+02 2.8 0.0 28 37 448 457 447 462 0.89 3 3 9.4e-21 2.7e-17 62.4 0.0 2 42 484 524 483 526 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCACTCGTCCACAATAATGGATATTCAGCGCGTTCTGCTTCAGCAGCAGAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTTGCAAAAGATGGAATCAGTGTGCGTGCTCATCTTTTTGTGCTGAGTACGTGCAGCGATCTTATGCGAAATATCCTGGTCGATTTACCCCCAGGCCAAGAGGCAACTGTCATCCTACCCGACATTCGAGGCGAGCTGCTGGAGAGCATGTTGTCTTTTATTTATATGGGTGAAACGAGCTTGCCATCTGCCTTGCTCACCGAATTTCTTGCAGCTATCAATCTCCTGGGCATAAAATCTGCCATAAGCTTTGAAACAAATCCCGCACCCATGACCACCACAAATGTGCTCAGCGGCGCTATGGCCGTCGAAGCAGCAAAATCCATAAGTGGTTTGCAAATTGCTAATGCGTCTCTAATGGAAGAGGAAGAGGAGGAAGAAGCTCCTAGCGCTGTGGTTGGTAAACTGGATATGGATACTACAGTGCTTGCGAATCCCCAGCAACATCAACACCATCACGAGCAGCAGCAAGAACGAACGTTAGAATTCCTTGACGTTTACAGCGATCAGCCGAAGATAACGTATTCCATCGAGCACATGGGTGGTAACAGCAGTGGCAATCAGTATATATTAACGGAAAACACGGGCACATTTACCATAACACAATCGGCATCATCTGTCACCAAACTAGGAGGAGCAGTGACTGCCGCTGTGATGGATACATCGACTCACAGCGGTCAAATGGTGGACGATGAGGTAGATGCAGATGTCCATGATGATCACGATGAATCGGAGTCTCAGTTAATCGAGGAGGAGTACGGAGCTACAGGTGATCCCCTAATAGAGATTAGTGCGGATGCAGAAATGACTGAAGATGTAATGCAAGAAGTGGATGCCGGCGAAGATGAGGACGACGAAGAACTGCTTGATATAAAACCACGCAAATCCCACCTTGATATGAAAATGTTAAAAACAAAGATACGACAGCGCACCACACCGACCAAGGTAGCGTCAAAGAAAGCAATGACGAAACAGCATCAACAACATGTGGCACTTAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTGGATTTGGCAGCTGAAGCTGTTCTTCACGAGGGACTAAGCTTGCAAAAGGCTGCAGATCGCTATGACATATCAAAAACCGTTCTATGGCGACGTGTTCGCTCCAATCCGGCATACTTGAAAATCAAGCGGGAGAAGCCATCGCTATCAGAGGCCTATGAACGTCTGAAGAACGGCGATTCCTTAAAAAGCATCAGCCAGGATCTGCAGATACCAATGTCGACGCTGCACCGGCACAAGGTACGCCTGGCGGCCCAGGGACGCTTGCCCGACTTTGTTGCCTGTCGGCGGCGGGACAGCACCCCAAAGGATGAGCTGCGCGACAAGCTTGCGAAGGCGTTGCATGCCTGTATCAGCGGTGGCATGTCCCAAAACCATGCTGCTAATCTATTCGAGATACCCAAGAGTACCCTTTGGCGCCATTTGCAGCGTCATGTCAGCGAAGCGGAAAGAAAAGTCAAGGAGGAGCAGGAAGAGGACGATGATGATGATGGTCTCAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLQQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNILVDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLAAINLLGIKSAISFETNPAPMTTTNVLSGAMAVEAAKSISGLQIANASLMEEEEEEEAPSAVVGKLDMDTTVLANPQQHQHHHEQQQERTLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSASSVTKLGGAVTAAVMDTSTHSGQMVDDEVDADVHDDHDESESQLIEEEYGATGDPLIEISADAEMTEDVMQEVDAGEDEDDEELLDIKPRKSHLDMKMLKTKIRQRTTPTKVASKKAMTKQHQQHVALKKELKDDINDALDLAAEAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYLKIKREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRHVSEAERKVKEEQEEDDDDDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01328001;
- 80% Identity
- iTF_01323500;