Dcra010993.2
Basic Information
- Insect
- Drosophila cracens
- Gene Symbol
- -
- Assembly
- GCA_035042505.1
- Location
- JAWNLF010000640.1:1552918-1554645[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-16 6.4e-13 48.2 0.0 2 45 379 422 378 422 0.95 2 3 0.071 97 2.8 0.0 28 37 452 461 451 466 0.89 3 3 1.9e-20 2.6e-17 62.2 0.0 2 42 488 528 487 530 0.96
Sequence Information
- Coding Sequence
- atgAATCACCTCAAATGGATGGGTCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGCGTGCGCGCCCATCTGTTTGTGCTGAGCACGTGTAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAAGAGGCAACGGTCATCCTACCCGACATACGAGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCACTGCTCTCCGAATTCCTCGAAGCCATCAATTTGCTGGGCATCAAGTCTGCAATTAGTTTTGAAACAAATCCAATAGCCATGACCAGCTCAAATGTCATCAGCGGCGCTATGGCTGTCGAGGCAGCAAAGTCTATTAGTggattgcaaattgcaaatgcatcGCTtgtcgaggaggaggaggaagaagaTGCTGGCGCAGTAGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAAtccccagcagcaacagcaacaacatcacgATCAGCAGCAAGGACGAACGTTAGAGTTTCTTGATGTGTACAGCGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACCAGCAATGGAAATCAGTTTATATTAACGGGGGACACGGGCACCTTTACCATTACACAATCGGCATCTTCCGTAAATAAACTGGGCGAATCAGTTAATTCCGTAATGGACACGGCGACGCACAGCGGTGAACTTGTCGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGATGGATCCGAATCCCAGTTAATCGAGGAGGAGTACGGGGCATCCGCCGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGACGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGAGGATGAAGAACTGTTGGATGTGAAACCACGCAAATCCCACCTAgacataaaaatgttaaaaaccAAGATACGCCAGCGCGCCCCGCCCACAAAGGTTGCATGCAAAAAAGCGATGACGaaacagcatcaacagcatgTCGCACTCAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTTGATCTGGCCGCAGACGCTGTCCTTCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGTTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTGTCGGAGGCCTACGAGCGTCTGAAGAATGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCAAATACCGATGTCTACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGCCTGCCCGACTTCGTCGCCTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGATAAGCTGGCGAAGGCGTTGCATGCCTGCATTAACGGTGGCATGTCCCAGAACCATGCCGCGAATCTCTTCGAAATACCCAAGAGCACGCTCTGGCGACATTTACAGCGTCGCGTCACCGAAGCGGAGCGGAAAGTcaaggaggagcaggaggaggacgaCGAGGAGGATGGTCTAAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSSNVISGAMAVEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQFILTGDTGTFTITQSASSVNKLGESVNSVMDTATHSGELVDDEVEADVTDDHDGSESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEEDEELLDVKPRKSHLDIKMLKTKIRQRAPPTKVACKKAMTKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00497519;