Spol018542.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- -
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010001673.1:5650023-5651636[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.8e-17 1.3e-13 51.0 0.0 2 45 369 412 368 412 0.95 2 3 0.07 1.6e+02 2.7 0.0 28 37 442 451 441 455 0.90 3 3 6.4e-21 1.5e-17 63.6 0.0 2 44 478 520 477 521 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATTCAGCGAGTTTTACTTCATCAGCAAAGCAACAATCAAAGCTGCGAGGTTTTGCTCGTTGCCAAAGATGGAATCAGTGTTCGTGCCCATCTTTTTGTACTCAGCACGTGCAGCGATCTGATGCGCAATTTGCTAATCGATTTACCTCCCGGCCAAGAGGCAACTGTTATCCTTCCCGATATTCGAGGCGAGTTGCTGGAGAGCATGTTGTCTTTTATTTATATGGGTGAAACGAGTTTGCCATCTACCCTGCTCACCGAATTTCTGGCAGCGATCAATCTGCTGGGCATCAAGTCTGCCATAAGTTTTGAAACAAATCCCGCTGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCCATCGAGGCTGCAAAATCCATTAGTGGTTTGCAAATTGCAAGTGCTTCTCtaatagaagaagaagaggaggAAGATGTAAACGCTGTGGTTGGTAAACTAGAGATGGATACTACAGTGCTCGCGAATCcccagcaacatcaacagcatcaTGAGCAGCAACAAGAACGAACGTTAGAATTCCTTGACGTTTACGGTGATCAGCCGAAGATTACGTATTCCATTGAGCACATGGGTGGCAACAGCAGTGGCAATCAATATATACTTACAGAAAACACGGGCACATTTACCATAACACAATCAGCATCTCCTGTAGCTAAACTAGGAGGAGCAGTGAATACAGCTGTAATGGATGCAGCTGCTCACAGCGGTCAAATGGTTGTCGATGAGGTGGACGCAGATGTCAATGATGATCACGATGATTCGGAGTCACATCTAATCGAGGAGGAGTACGGTGCTTCAGGCGATCCTCTCATAGAGATAAGTGCAGATACAGACGATATGACAGAAGATGTAATGCAAGAAGTGGATGCTGGCGACGAGGATGATGTTGAAGACTTGCTAGAGGTGAAACCTCGCAAGACCCACCTAGATATTAAaatgctaaaaacaaaaataagccAGCGCTCCTCAGAAACAAAGGTCGCTTCAAAGAATGCGATAACGaaacagcatcaacagcatGTGGCACTTAAAAAAGAGCTCAAGGATGATATTAATGATGCTCTTGATTTAGCTGCTGAAGCTGTCCTTCACGAAGGGTTGAGTCTGCAAAAGGCTGCAGATCGATATGACATATCAAAAACCGTGCTTTGGCGACGTGTACGCTCTAATCCGGCTTACATGAGAATAAAGCGCGAGAAACCATCGCTATCGGAGGCCTACGAGCGTCTAAAGAATGGCGATTCATTAAAAAGCATAAGCCAGGACCTGCACATACCAATGTCGACGCTGCACCGGCACAAAGTGCGCCTGGCAGCCCAGGGATGCTTGCCCGATTTTGTCGCCAGTCGGCGGAGGGACAGCACTCCAAAAGACGAGCTGCGCGACAAGCTTTCAAAGGCTTTGCATGCCTGCGTAAATGGTGGCATGTCTCAAAACCATGCTGCAAATCTTTTCGAGATACCTAAGAGTACGCTCTGGCGTCATTTGCAACGTCATGTTAGCCATGAAAAGAAAGTTAAGGAGGAGCAGgaagacgacgacgaggaAGATGGTCTAAATTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLIDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSTLLTEFLAAINLLGIKSAISFETNPAAMTSTNVISGAMAIEAAKSISGLQIASASLIEEEEEEDVNAVVGKLEMDTTVLANPQQHQQHHEQQQERTLEFLDVYGDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSASPVAKLGGAVNTAVMDAAAHSGQMVVDEVDADVNDDHDDSESHLIEEEYGASGDPLIEISADTDDMTEDVMQEVDAGDEDDVEDLLEVKPRKTHLDIKMLKTKISQRSSETKVASKNAITKQHQQHVALKKELKDDINDALDLAAEAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGCLPDFVASRRRDSTPKDELRDKLSKALHACVNGGMSQNHAANLFEIPKSTLWRHLQRHVSHEKKVKEEQEDDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01328001;
- 80% Identity
- iTF_01326525;