Sgra005895.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000243.1:3152493-3154244[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-16 2e-13 49.6 0.0 2 45 383 426 382 426 0.95 2 3 0.048 92 2.6 0.0 28 37 456 465 455 469 0.90 3 3 1.6e-20 3e-17 61.8 0.0 2 42 492 532 491 534 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCACTCGTCCACAATAATGGATATTCAGCGAGTTTTACTTCAACAGCAAAGCAACAATCAAAGCTGCGAGGTTTTGCTCGTTGCCAAAGATGGAACCAGTGTTCGGGTCCATCTTTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCCAAATCCTTGTCGATTTACCGCCCGGCCAAGAGGCAACTGTTATCCTTCCCGACATACGCGGCGAGCTGCTCGAGAGCATGTTGTCCTTTATTTATATGGGTGAAACGAGCTTGCCATCTGCCCTGCTCACCGAATTCCTCGCAGCCATCAATCTGCTGGGCATCAAGTCGGCCATAAGTTTCGAAACACATCCCTCAGCCATGGCCAGCGCAAATGTCATCAGCGGCGCCATGGCCGTCGAGGCGGCAAAATCCATTAGTGGCTTGCAAATTGCTAGTGCTGCTCTTATGCAAGAAGAAGAAGAGGTGGAGGAGGAAGATGTCAACGCAGTGGTTGGTAAACTACAGATGGACACTTCAGTGCTCGCGAATCAAACCCAGCAACATCCGCATCATGAGCAGCAGCAGCAGCAAGAACGGACGTTAGAATTCCTTGACGTATACAGTGATCAGCCGAAGATAACGTATTCCATTGAGCACATGGGCGGCAACAGCAGTGGCAATCAGTATATTCTAACAGAGAACACGGGCACATTTACCATAACACAATCAGCATCTCCTTCTAAACTAGAAGGAGCAGTGAATTCAGCTGTCATGGATGCAGCGGCTCACAGCGGTCAAATGGTGGTCGACGAGGTGGACGCCGATGTCAGTCAAGATGATCCCGATGAATCGGAGTCACAGTTAATCGAGGAGGAGTACGGCGCTACAGGCGATCCCCTAATAGAGATCAGTGCCGAGGCGGATGATATGACCGAAGATGTAATGCAAGAAGTGGATGCCGGCGACGAGGAGGAGGATGATGAAGAATTGCTAGATGTAAAACCACGCAAAACCCACCTAGATATTAAAATGCTAAAAACAAACAAAATACGCCAGCGCTCCTCAGCAACAAAAGTGGCGTCAGTTAAGAAAGCGATAACGAAACAGCATCAACAGCATGTGGCACTGAAAAAGGAGCTCAAGGATGATATAAATGATGCTCTTGATTTGGCCGCCGACGCTGTCCTTCACGAGGGGCTGAGTCTGCAGAAGGCGGCGGATCGTTATGACATATCAAAAACCGTGCTATGGCGACGCGTTCGCTCTAATCCGGCGTACATGAGAATAAAGCGCGAGAAGCCATCGCTGTCGGAGGCCTATGAGCGTCTAAAGAACGGCGATTCATTGAAAAGCATCAGCCAGGATCTGCACATACCAATGTCGACGCTGCACCGGCACAAAGTGCGCCTGGCAGCCCAGGGATGCCTGCCCGATTTTGTCGCCAGTCGGCGGAGGGACAGCACGCCAAAGGACGAGCTGCGCGACAAGCTGTCAAAGGCGTTGCATGCCTGCGTAAACGGTGGCATGTCTCAAAACCATGCCGCCAATCTCTTCGAGATACCTAAGAGTACGCTCTGGCGTCATTTGCAACGTCATGTTAGCGAAGCGGAGAGGAAAGTCAAGGAGGAGCAGGAAGACGACGATGACGATGATGGTCTCAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLQQQSNNQSCEVLLVAKDGTSVRVHLFVLSTCSDLMRQILVDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLAAINLLGIKSAISFETHPSAMASANVISGAMAVEAAKSISGLQIASAALMQEEEEVEEEDVNAVVGKLQMDTSVLANQTQQHPHHEQQQQQERTLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSASPSKLEGAVNSAVMDAAAHSGQMVVDEVDADVSQDDPDESESQLIEEEYGATGDPLIEISAEADDMTEDVMQEVDAGDEEEDDEELLDVKPRKTHLDIKMLKTNKIRQRSSATKVASVKKAITKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGCLPDFVASRRRDSTPKDELRDKLSKALHACVNGGMSQNHAANLFEIPKSTLWRHLQRHVSEAERKVKEEQEDDDDDDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01322760;
- 80% Identity
- iTF_01322760;