Scal003096.1
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- -
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000146.1:2572901-2574517[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-16 2.1e-13 49.6 0.0 2 45 369 412 368 412 0.95 2 3 0.067 92 2.7 0.0 28 37 442 451 441 456 0.90 3 3 1.6e-20 2.2e-17 62.4 0.0 2 42 478 518 477 520 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATTCAGCGCGTTCTACTCCAGCAGCAGAGCAACAATCAGAGCTGCGAGGTTCTGCTGGTCGCCAAAGATGGAATCAGTGTGCGTGCTCATCTCTTTGTGCTGAGCACATGCAGCGATTTGATGCGCAATCTTCTCGTCGACTTGCCTCCCGGCCAAGAGGCAACTGTTATCTTACCCGATATTCGCGGCGAGCTGCTGGAAAGCATgttgtcatttatttatatgggTGAAACAAGCTTGCCATCTGCTCTACTCACCGAATTTCTTGCAGCTATCAATTTGCTGGGCATAAAGTCAGCCATAAGTTTTGAAACGAATCCCACAGCCATGACCACCACAAATGTCCTCAGCGGCGCTATGGCCGTTGAGGCAGCAAAGTCTATTAGTGGTTTGCAAATCGCTAATGCATCTATTatagaagaggaagaggaggaagaagaTGCTAACGCTGTGGTTGGTAAACTGGAGATGGATACCACTGTCCTCGCAAATCcccagcaacatcaacagcaccacgagcagcagcaagagcgaACGTTAGAATTTCTTGACGTTTACAGCGATCAGCCGAAGATAACGTACTCCATTGAACACATGGGCGGCAATAGCAGTGGCAATCAGTATATACTTACAGAAAACACAGGCACATTTACCATAACACAATCAGCATCTTCAGTAACTAAACTTGGAGGAGCAGTGAATGCAGCCGTAATGCATGCAGCAACTCACAACAGTCAAATGGTGGACGATGAGGTGGACGCAGATGTTAATGACGACCATGATGAATCAGAGTCGCAGTTAATTGAAGAGGAATACGGAGCTTCAGGTGATCCCCTTATAGAGATTAGTGCTGAAGCAGACATGACAGAAGATGTAATGCATGAAGTTGATGCCGGCGATGAGGAGGACGATGAAGAACTGCTAGATGTTAAACCACGAAAATCCCACCttgatattaaaatgttaaaaacaaagatACGCCAGCGCGCCTCATCAACAAAAGTCGCTTCAAAGAAGGCGATAAcaaaacagcatcaacagcatgTGGCCCTTAAAAAGGAGATCAAGGATGATATTAATGATGCCCTTGATTTAGCAGCTGACGCTGTCCTTCATGAGGGACTGAGTCTGCAAAAGGCTGCAGATCGTTATGACATATCAAAAACCGTTCTATGGCGACGAGTACGCTCTAATCCTGCATACATGAGAATAAAGCGCGAGAAGCCATCGCTATCGGAGGCATATGAACGTCTTAAGCACGGCGATTCGTTGAAAAGCATAAGCCAGGACTTGCACATACCAATGTCGACGCTACACCGGCACAAGGTACGCCTGGCGGCCCAGGGACGACTGCCTGATTTTGTTGCCTGTCGGCGGCGAGACAGTACGCCGAAGGATGAGCTGCGCGATAAGCTTGCAAAAGCCTTGCATGCCTGCATAAGCGGTGGTATGTCTCAAAATCATGCTGCAAATCTCTTTGAGATACCCAAGAGTACGCTCTGGCGTCATTTGCAACGTCATGTAAGCGAAGCGGAAAGGAAAGTCAAGGAGGAGCAGGAAGATGACGAGGAGGAAGATGGTCTCAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLQQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLAAINLLGIKSAISFETNPTAMTTTNVLSGAMAVEAAKSISGLQIANASIIEEEEEEEDANAVVGKLEMDTTVLANPQQHQQHHEQQQERTLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSASSVTKLGGAVNAAVMHAATHNSQMVDDEVDADVNDDHDESESQLIEEEYGASGDPLIEISAEADMTEDVMHEVDAGDEEDDEELLDVKPRKSHLDIKMLKTKIRQRASSTKVASKKAITKQHQQHVALKKEIKDDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKHGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRHVSEAERKVKEEQEDDEEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01328001;
- 80% Identity
- iTF_01320573;