Doch006554.1
Basic Information
- Insect
- Drosophila ochracea
- Gene Symbol
- -
- Assembly
- GCA_035044125.1
- Location
- JAWNML010000047.1:4285504-4287126[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-16 2.2e-13 49.6 0.0 2 45 371 414 370 414 0.95 2 3 0.062 94 2.7 0.0 28 37 444 453 443 458 0.90 3 3 1.1e-20 1.6e-17 62.8 0.0 2 42 480 520 479 523 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATTCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGTGCCCATCTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGAAATCTTCTCGTCGATTTACCCACTGGCCAGGAGGCAACAGTCATATTGCCAGACATACGAGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCTTGCTCTCCGAGTTCCTCGAAGCCATCAATCTGCTGGGCATCAAGTCTGCCATTAGTTTTGAAACGAATCCAATAGCCATGACAAGTACAGATGTGATCAGCGGCGCTATGGCCATCGAGGCAGCAAAGTCAATTAGTggattgcaaattgcaaatgcatcGCTtgtcgaggaggaggaggaagacgATGCTGGCGCGGTGGTTGGCAAACTTCAGATGGATAACACATTGCTCGCTAAtccccagcagcaacagcatcacgATCAGCAGCAGGGACGAACGTTAGAGTTTCTTGATGTGTACAGTGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACTAGCAATGGCAATCAGTATATATTAACGGAAAACACGGGCACCTTCACCATTACACAATCGGCATCTTCCGTAAATAAATTGGGCGATACAGTTAATCCCGTAATGGACACAGCGACGCACAGCGGAGAACTGGTTGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGAATCCGAATCTCAGTTAATCGAGGAAGAGTACGGGGCATCCGCGGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGATGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGACGACGAAGAACTGCTGGATGTGAAGCCACGCAAATCCCACCTagacataaaaatgttaaaaacaaaGATACGCCAGCGCGCCACGGCCACAAAGGCTGCGTCCAAAAAAGCGATAACGAAGCAGCATCAAGAGCATGTGGCACTGAAAAAGGAGCTCAAGGAAGATATCAATGATGCCCTTGATCTGGCTGCAGAAGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTATCGGTGGCCTACGAGCGTCTGAAGAACGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCACATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGACTGCCCGACTTCGTCGCCTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCATTACATGCCTGCATCAACGGTGGCATGTCACAGAACCATGCCGCGAATCTCTTCGAAATACCCAAGAGCACACTTTGGCGACATTTACAGCGACGCGTCACCGAGTCTGAGCGAAAAGTcaaggaggagcaggaggaggacgACGAGGAGGATGGACTTAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTDVISGAMAIEAAKSISGLQIANASLVEEEEEDDAGAVVGKLQMDNTLLANPQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQYILTENTGTFTITQSASSVNKLGDTVNPVMDTATHSGELVDDEVEADVTDDHDESESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEDDEELLDVKPRKSHLDIKMLKTKIRQRATATKAASKKAITKQHQEHVALKKELKEDINDALDLAAEAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSVAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTESERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00564760;