Ddem005433.1
Basic Information
- Insect
- Drosophila demipolita
- Gene Symbol
- -
- Assembly
- GCA_035042405.1
- Location
- JAWNLI010000059.1:2017943-2019571[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-16 6e-13 48.2 0.0 2 45 373 416 372 416 0.95 2 3 0.025 36 4.1 0.0 27 37 445 455 436 460 0.91 3 3 2.7e-20 3.8e-17 61.6 0.0 2 41 482 521 481 523 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTTTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCGTGCTGGTGGCCAAAGATGGCATCAGCGTGCGTGCCCATCTTTTTGTGCTGAGCACGTGCAGCGATCTAATGCGCAATATCCTCGTCGATTTACCCACTGGCCAGGAGGCAACGGTCATCTTGCCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCATGCTCTCCGAATTCCTTGAAGCCATCAATCTGCTGGGCATCAAGTCTGCTATTAGTTTTGAAACGAATCCAATAGCCATGACCACAACAAATGTCATTAGCAGCGCTATGGCCGTCGAAGCAGCAAAGTCAATTAGTGGactacaaattgcaaatgcatcGCTTGTCGAGGTggaggaagaagaagatgcTAGCGCTGTGGTTGGCAAACTTCAGATGGATAACACAGTACTTGCCAATccacagcaccaacagcaacaacatcacgATCAGCAGCAAGGACGAACATTGGAGTTTCTTGATATGTACAGCGATCAGCCCAAAATAACATATTCCATTGAGCATATGGGCGGCACTAGCAGTGGCAATCAGTATATATTAACGGAGAACACAGGCACCTTTACCATTACGCAATCAGCATCTTCCGTAAATAAATTAGGCGAATCAGTTAATTCCGTAATGGATACAGCGACGCACAGCAGCGAACTGGTTGACGATGAAGTTGAGGCGGATGTCACCGATGATCACGAGGAATCCGAATCTCAGTTAATTGAGGAGGAGTACGGGGCAACCACCCATCGCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGATGTGATGCATGAAGTGGGTGACTGCGACGAAGAGGAAGATGATGAAGAACTGCTGGATGTGAAGCCACGCAAATCCCACCTAGACATAAGAATGTTAAAAACGAAGATACGGCAGCGCGCAACGCCAACAAAGGCGTCGGCCAAAAAATCGATAACgaaacagcatcaacagcatgTGGCACTGAAAAGGGAGCTGAAGGACGATATCAATGATGCTCTTGATCTGGCCGCAGATGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCTGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATTAAGCGGGAGAAGCCTTCGCTTTCGGAGGCCTACGAGCGTCTGAAGAATGGCCACTCTCTGAAGAGCATCAGCCAGGATCTGAACATACCCATGTCAACGTTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGCCTGCCGGCTTTCGTCGCGTGTCGGCGGCGAGACAGCACTCCCAAGGATGAACTGCGCGACAAGCTGGCGAAGGCGTTGCATGCTTGCATCAACGGTGGCATGTCTCAGAACCATGCCGCAAATCTCTTCGAAATACCCAAGAGCACACTCTGGCGACATTTACAGCGTCGTGTCGCCGAAGCGGAACGGAAAGTCAAGGAGGAACAGGAGGAGGACGACGAGGAGGATGGTCTAAACTAa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVVLVAKDGISVRAHLFVLSTCSDLMRNILVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSAMLSEFLEAINLLGIKSAISFETNPIAMTTTNVISSAMAVEAAKSISGLQIANASLVEVEEEEDASAVVGKLQMDNTVLANPQHQQQQHHDQQQGRTLEFLDMYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVNKLGESVNSVMDTATHSSELVDDEVEADVTDDHEESESQLIEEEYGATTHRLIEISADADADADMTEDVMHEVGDCDEEEDDEELLDVKPRKSHLDIRMLKTKIRQRATPTKASAKKSITKQHQQHVALKRELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGHSLKSISQDLNIPMSTLHRHKVRLAAQGRLPAFVACRRRDSTPKDELRDKLAKALHACINGGMSQNHAANLFEIPKSTLWRHLQRRVAEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00498985;