Dsec011129.1
Basic Information
- Insect
- Drosophila seclusa
- Gene Symbol
- -
- Assembly
- GCA_035043575.1
- Location
- JAWNMX010000629.1:2694408-2696030[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-16 1.1e-12 47.4 0.0 2 45 371 414 370 414 0.94 2 3 0.059 94 2.8 0.0 28 37 444 453 443 458 0.89 3 3 6.8e-20 1.1e-16 60.2 0.0 2 42 480 520 479 522 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGAATCAGTGTGCGCGCCCATCTCTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAGGAGGCAACGGTCATCCTACCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCCGCCCTGCTCTCCGAATTCCTCGAAGCCATCAATTTGCTGGGCATCAAGTCCGCAATTAGTTTTGAAACAAATCCAATAGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCTGTCGAGGCAGCAAAGTCTATTAGTggattgcaaattgcaaatgcatcGCTTGTcgaggaggaagaggaagaagatgCTGGCGCAGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAAtccccagcagcaacaacatcacgATCAGCAGCAAGGACGAACGTTAGAGTTTCTTGATGTGTACAGCGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACCAGCAATGGAAATCAGTTTATATTAACGGAGAACACGGGCACCTTTACCATTACACAGTCGGCATCTTCCGTAAATAAACTGGGCGAATCAGTTAATTCCGTAATGGACACGGCGACGCACAGCGGTGAGCTTGTCGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGATGGATCCGAATCCCAGTTAATCGAGGAGGAGTACGGAGCATCCGCCGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGACGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGAGGATGAAGAACTGTTGGATGTGAAGCCACGCAAATCCCACCTagacataaaaatgttaaaaacaaaGATACGCCAGCGCGCCCCGCCCTCAAAGGCGGCGTGCAAAAGAGCGATGACgaaacagcatcaacagcatgTGGCACTGAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTCGATCTGGCCGCAGACGCTGTGCTCCACGAAGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGTCGGGTGCGCTCCAATCCGGCGTACATGCAAATCAAGCGAGAGAAACCATCGCTGTCGGAAGCCTACGAACGTCTGAAGAATGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCAAATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGCCTGCCCGACTTCGTCGCTTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGATAAGCTGTCGAAGGCGTTGCATGCCTGCATTAGCGGTGGCATGTCCCAGAACCATGCCGCGAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGACATTTACAGCGTCGCGTCACCGAAGCGGAACGGAAAGTcaaggaggagcaggaggaggttGACGAGGAGGATGGTCTAAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTNVISGAMAVEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQFILTENTGTFTITQSASSVNKLGESVNSVMDTATHSGELVDDEVEADVTDDHDGSESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEEDEELLDVKPRKSHLDIKMLKTKIRQRAPPSKAACKRAMTKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMQIKREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLSKALHACISGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEVDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00593225;