Dbas000848.1
Basic Information
- Insect
- Drosophila basisetae
- Gene Symbol
- -
- Assembly
- GCA_035041595.1
- Location
- JAWNLB010000020.1:2735197-2736831[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5e-16 5.7e-13 48.2 0.0 2 45 375 418 374 418 0.95 2 3 0.079 91 2.7 0.0 28 37 448 457 447 462 0.90 3 3 3.1e-20 3.6e-17 61.7 0.0 2 42 484 524 483 526 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGTGCCCATCTGTTTGTGCTGAGCACGTGCAGCGATCTAATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAGGAGGCAACAGTCATCCTGCCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCATCTGCCCTGCTCTCCGAATTCCTCGAAGCCATCAATCTGCTGGGCATCAAGTCTGCCATTAGTTTTGAAACGAATCCAATAGCCATGACCAGTACAGATGTGCTCAGCGGCGCTATGGCCATCGAGGCAGCAAAGTCAATTAGTggattgcaaattgcaaatgcatcgcttgtcgaggaggaggaggaagaggatgCTGGCGCGGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCTAAtccccagcagcaacatcaacagcaacagcatcacgATCAGCATCAGGGACGAACGTTAGAGTTTCTTGATGTGTACAGTGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCAATAGCAATGGCAATCAGTATATATTAACGGAGAACACGGGCACCTTCACCATTACACAATCGGCATCTTCCGTAAATAAATTGGGCGATACAGTTAATCCCGTCATGGATACAGCGACGCACAGCGGTGAACTGGTTGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGAATCCGAATCCCAGTTAATCGAGGAAGAGTACGGGGCATCCGCGGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGATGTAATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGACGATGAAGAACTGCTGGATGTGAAGCCACGCAAATCCCACCTagacataaaaatgttaaaaacaaaGATACGCCAGCgcgccacgcccacaaaatCTGCGTCCAAAAAAGCGATAACGAAACAGCATCAAGAGCATGTGGCACTGAAAAAGGAGCTCAAGGAAGATATCAATGATGCCCTTGATCTGGCTGCAGACGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAACGAGAGAAGCCATCGCTATCGGAAGCATACGAACGTCTGAAGAACGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCACATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGACTGCCCGACTTCGTTGCCTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCATTACATGCCTGCCTCAGCGGTGGCATGTCACAGAACCATGCCGCTAATCTCTTCGAAATACCCAAGAGCACACTTTGGCGACATTTACAGCGGCGCGTCACCGAAGCCGAGCGAAAAGTcaaggaggagcaggaggaggacgaCGAGGAGGACGGGCTTAactaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTDVLSGAMAIEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQHQQQQHHDQHQGRTLEFLDVYSDQPKITYSIEHMGGNSNGNQYILTENTGTFTITQSASSVNKLGDTVNPVMDTATHSGELVDDEVEADVTDDHDESESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEDDEELLDVKPRKSHLDIKMLKTKIRQRATPTKSASKKAITKQHQEHVALKKELKEDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACLSGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00485961;