Smon017500.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- -
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000028.1:410242-411959[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.1e-17 2.5e-13 49.6 0.0 2 45 375 418 374 418 0.95 2 3 0.041 1.1e+02 2.7 0.0 28 37 448 457 447 461 0.90 3 3 1.6e-20 4.3e-17 61.6 0.0 2 42 484 524 483 526 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCACTCGTCCACAATAATGGATATTCAGCGAGTTTTGCTTCATCAGCAAAGCAACAATCAAAGCTGCGAGGTTTTGCTTGTTGCCAAAGATGGAATCAGTGTTCGTGCCCATCTTTTTGTGCTGAGCACTTGCAGCGATCTGATGCGCAATCTCCTTGTCGATTTACCTCCCGGCCAAGAGGCAACTGTAATCCTTCCTGACATTCGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTTATTTATATGGGTGAAACGAGTTTGCCATCTTCCCTGCTCACCGAATTTCTCGCAGCTATCAATCTGCTAGGCATAAAGTCTGCCATAAGTTTTGAAACAAATCCCACTGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCCGTAGAGGCTGCAAAATCCATTAGTGGTTTGCAAATTGCAAGTGCTTCTCTTATTGAAGAAGAAGAGGAAGAAGATGTTAATGCTGTGGTTGGTAAACTCGATATGGATACTACAGTGCTCGCGAATCCCCAGCAACATCAACAGCATCATGAGCACCAGCAAGAACGAACGTTAGAATTCCTTGACGTTTACAGTGATCAGCCGAAGATTACGTATTCCATTGAGCACATGGGCGGCAACAGCAGTGGCAATCAATATATACTAACAGAAAACACGGGCACATTTACCATAACACAATCTGCACCTTCTGTAACTAAACTAGGAGCAGCAGTGAATACAGCTATAATGGATGCAGCGGCTCACAGCGGTGAAATGGTGGTCGATGAGGTGGACGCAGATGTCAATGATGATCACGACGAATCGGAGTCACAGTTAATAGAGGAGGAGTACGGCGCTTCAGGCGATCCTCTAATAGAATTAAGTGCAGATGCAGAAGATATGACAGAAGATGTAGTGCAAGATGTAGATGCTGGCGAAGAGGAGGATGATGAAGAATTTCTAGATGTAAAACCTCGCAAAACCCACCTTGATATTAAAATGTCAAAAACAAAAATACGCCAGCGCGACTCAGAAACAAAAGTCGCGTCAAAGAAAGCGATAACGAAACAGCATCAACAGCATGTGGCACTTAAGAAAGAGCTAAAGGATGATATAAATGATGCTCTTGATTTGGCCGCTGACGCTGTCCTTCACGAAGGACTGAGTCTGCAAAAGGCTGCGGATCGTTATGACATATCAAAAACCGTGCTATGGCGACGTGTACGCTCCAATCCGGCATACATGAGAATAAAGCGCGAGAAGCCATCGCTATCGGAGGCCTATGAGCGTCTAAAGAGTGGCGATTCATTAAAAAACATAAGCCAGGATCTGCACATACCAATGTCGACGCTTCACCGGCACAAAGTTCGTCTAGCAGCCCAGGGATGCTTGCCCGATTTTGTCGCCAGTCGGCGGAGGGACAGTACTCCAAAGGACGAGCTGCGCGAAAAGCTTTCAAAGGCGTTACATGCCTGCGTAAACGGTGGCATGTCCCAAAATCATGCTGCGAATCTTTTCGAGATACCCAAAAGTACGCTCTGGCGTCATTTACAACGTCATGTTAGCGAAGCGGAAAGGAAAGTCAAGGAAGAGCAGGAAGACGACGATGAGGAAGATGGTCTCAATTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSSLLTEFLAAINLLGIKSAISFETNPTAMTSTNVISGAMAVEAAKSISGLQIASASLIEEEEEEDVNAVVGKLDMDTTVLANPQQHQQHHEHQQERTLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSAPSVTKLGAAVNTAIMDAAAHSGEMVVDEVDADVNDDHDESESQLIEEEYGASGDPLIELSADAEDMTEDVVQDVDAGEEEDDEEFLDVKPRKTHLDIKMSKTKIRQRDSETKVASKKAITKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKNISQDLHIPMSTLHRHKVRLAAQGCLPDFVASRRRDSTPKDELREKLSKALHACVNGGMSQNHAANLFEIPKSTLWRHLQRHVSEAERKVKEEQEDDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01328001;
- 80% Identity
- iTF_01324250;