Dkok006223.1
Basic Information
- Insect
- Drosophila kokeensis
- Gene Symbol
- -
- Assembly
- GCA_035042145.1
- Location
- JAWNLT010000263.1:7107561-7109189[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-16 1.3e-12 47.2 0.0 2 45 373 416 372 416 0.95 2 3 0.059 94 2.8 0.0 28 37 446 455 445 460 0.89 3 3 1.6e-20 2.6e-17 62.2 0.0 2 42 482 522 481 524 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGTGCCCATTTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAAGAGGCAACGGTCATCCTACCCGACATACGAGGCGAGCTGCTAGAGAGCATGTTGTCTTTCATTTATATGGGTGAAGCGAGTTTGCCCTCTGCCCTGCTCTCCGAATTCCTCGAAGCCATTAATTTGCTGGGCATCAAGTCTGCAATTAGTTTTGAAACAAATCCAATAGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCTGTCGAGGCAGCAAAGTCTATTAGTggattgcaaattgcaaatgcatcgctggtcgaggaggaggaggaagaagaTGCTGGCGCAGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAAtccccagcagcaacagcaacaacatcacgATCAGCAGCAAGGACGGACGTTAGAGTTTCTTGATGTGTACAGCGATCAGCCGAAAATAACGTATTCCATTGAACATATGGGCGGCACCAGCAGTGGAAATCAGTTTATATTAACGGAGAACACGGGCACCTTTACCATTACACAGTCGGCATCTTCCGTAAATAAACTGGGCGAATCAGTTAATTCCGTAATGGACACGGCGACGCACAGCGGTGAACTTGTCGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGGATCCGAATCACAGTTAATCGAGGAGGAGTACGGGGCATCCGCCGATCCCTTGATGGAGATCagtgcagatgcagatgccgATGCTGATATGACCGAGGACGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGAGGATGAAGAACTGTTGGATGTGAAGCCACGCAAATCCCACCTAgacataaaaatgttaaaaacaaaGATACGCCAGCGCGCCCCGCCCACAAAGGCTGCGTGCAAAAAAGCGATGACgaaacagcatcaacagcatgTCGCACTCAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTTGATCTGGCCGCAGACGCTGTCCTTCTCGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGTTCTAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTGTCGGAGGCCTACGAACGTCTGAAGCATGGCGATTCTCTGAAGAGCATCAGCCAGGATCTGCAAATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAGGGACGCCTGCCCGACTTCGTCACCAGTCGGCGGCGAGACAGTACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCGTTGCATGCCTGCATTAACGGTGGCATGTCCCAGAACCATGCCGCGAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGACATTTACAGCGTCGCGTCACCGAAGCAGAGCGGAAAGtcaaggaggagcaggaggaggacgaCGAGGAGGATGGTCTAAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGEASLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTNVISGAMAVEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSSGNQFILTENTGTFTITQSASSVNKLGESVNSVMDTATHSGELVDDEVEADVTDDHDGSESQLIEEEYGASADPLMEISADADADADMTEDVMHEVGAGDEEEEDEELLDVKPRKSHLDIKMLKTKIRQRAPPTKAACKKAMTKQHQQHVALKKELKDDINDALDLAADAVLLEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKHGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVTSRRRDSTPKDELRDKLAKALHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00528171;