Dcon003924.1
Basic Information
- Insect
- Drosophila conformis
- Gene Symbol
- -
- Assembly
- GCA_035041375.1
- Location
- JAWNLE010000547.1:697059-698687[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-16 6.5e-13 48.2 0.0 2 45 373 416 372 416 0.95 2 3 0.064 99 2.8 0.0 28 37 446 455 445 460 0.89 3 3 3e-20 4.6e-17 61.5 0.0 2 42 482 522 481 524 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGCGCCCATCTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAGGAGGCAACGGTCATCCTACCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCCTGCTCTCCGAATTCCTCGAAGCCATAAATTTGCTGGGCATCAAGTCGGCAATTAGTTTTGAAACAAATCCAATAGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCTGTCGAGGCAGCAAAGTCTATTAGTggattgcaaattgcaaatgcatcGCTTGTCGAGGAAGAGGAGGAAGAAGATGCTGGCGCAGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAAtccccagcagcaacagcaacaacatcacgATCAGCAGCAAGGACGAACGTTAGAGTTTCTTGATGTGTACAGCGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACCAGCAATGGAAATCAGTTTATATTAACGGAGAACACGGGCACCTTTACCATTACACAGTCGGCATCTTCCGTAAATAAACTGGGCGAATCAGTTAATTCCGTAATGGACACGGCGACGCACAGCGGTGAACTTGTCGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGATGGATCCGAATCCCAGTTAATCGAGGAGGAGTACGGAGCATCCGCCGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGTTGATATGACCGAGGACGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGAGGATGAAGAACTGTTGGATGTGAAGCCACGCAAATCCCACCTAgacataaaaatgttaaaaacaaaGATACGCCAGCGCGCCCCGCCCACAAAGGCGGCGTGCAAAAAAGCGATGACgaaacagcatcaacagcatgTAGCACTGAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTCGATCTGGCCGCAGACGCTGTCCTCCACGAGGGATTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTGTCGGAGGCCTACGAACGTCTGAAGAATGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCAAATACCGATGTCGACGCTGCATAGGCACAAGGTACGCCTGGCGGCCCAAGGACGCCTGCCCGACTTCGTCGCTTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCGTTGCATGCCTGCATTAGCGGGGGCATGTCCCAGAACCATGCCGCGAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGACATTTACAGCGTCGCGTCTCCGAAGCGGAACGGAAAGTcaaggaggagcaggaggaggacgaCGAGGAGGATGGTCTAAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTNVISGAMAVEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQFILTENTGTFTITQSASSVNKLGESVNSVMDTATHSGELVDDEVEADVTDDHDGSESQLIEEEYGASADPLIEISADADADVDMTEDVMHEVGAGDEEEEDEELLDVKPRKSHLDIKMLKTKIRQRAPPTKAACKKAMTKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRRVSEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00496741;