Sred005603.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- -
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000606.1:552493-554103[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-16 2.2e-13 49.6 0.0 2 45 367 410 366 410 0.95 2 3 0.056 96 2.8 0.0 28 37 440 449 439 454 0.89 3 3 4.4e-20 7.6e-17 60.7 0.0 2 41 476 515 475 518 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACGCGTCCACAATAATGGATATTCAGCGCGTTCTGCTTCACCAGCAGAGCAACAATCAAAGCTGCGAGGTTCTTCTAGTTGCCAAAGATGGAATCAGTGTACGTGCCCATCTTTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTTCTGGTCGATTTACCTCCAGGCCAAGAGGCAACTGTCATCCTACCCGATATTCGCGGTGAGCTGTTGGAGAGCATGTTGTCTTTCATATATATGGGTGAAACGAGTTTGCCATCTGCCCTGCTCACCGAATTTCTCGCAGCTATCAACTTGCTGGGCATAAAGTCTGCCATAAGTTTTGAAACAAATCCCACAGCAATGACCACCACAAATGTCCTTAGCAGCGCTATGGCCGTGGAAGCAGCAAAGTCCATTAGTggcttgcaaattgcaaatgcgtCTCTAATGGAAGAGGAGGAAGAAGATGCTAACTCTGTGGTTGGTAAGTTGGAGATGGATACAACTGTGCTCGCGAATacgcagcaacatcaacagcatcacgagcagcagcaggagcgaACGTTGGAATTCCTTGACGTTTACAGCGATCAGCCCAAAATTACGTATTCAATTGAGCACATGGGCGGCAACAGCAGTGGCAATCAGTATATACTAACAGAAAACACTGGTACGTTTACCATAACACAATCAGCATCTTCTGTAACTAAGTTAGGAGGAGCAGTGAACGCAGCAGTGATGGATGCAGCAGCGCACAGTGGCCAAATGGTGGACGATGAGGTGGACGCAGACGTCAATGATGATCACGATGAATCGGAGTCACAGCTTATAGAGGAGGAGTACGGAACTGCAGGCGATCCCCTAATAGAGATAAGTGCAGATGCAGATATGTCTGAAGATGTAATGCAAGAAGTGGATGCCGGCGAAGAGGAAGATGATGAAGAACTTCTTGATGTAAAACCACGCAAATCCCACCTagatattaaaatgttaaaaactaaGATACGCCAGCGTGCCTCGCCAGTAAAAGTCTCATCGAAGAAAGCGATAACGAAACAACACCATCATCAAGTAGCACTTAAAAAGGAGATCAAGGATGATATTAATGATGCTCTTGATTTGGCAGCTGATGCTGTCCTTCACGAAGGACTGAGTCTGCAAAAAGCTGCGGATCGTTATGACATATCAAAAACCGTTTTATGGCGACGAGTACGATCTAATCCTGCATACATGAGAATCAAGCGCGAGAAGCCATCGCTATCGGAGGCCTATCAGCGTCTGAAAAAGGGCGATTCATTAAAAAGCATAAGCCAGGATCTGCACATACCAATGTCGACGCTTCACAGGCACAAGGTGCGTCTGGCGTCGCAGGGTTGCCTGCCCGATTTTGTGGCCTGTCGGCGACGGGATAGCACCCCGAGAGACGAGCTCCGCGACAAACTTGCAAAGGCAGTGCATGCCTGCATAACCGGTGGCATGTCCCAAAACCATGCTGCGAATCTCTTCGAGATACCCAAGAGTACGCTCTGGCGCCATTTGCAGCGTCACGTTAACGAACGGGAAAGGAAAGTCAAGGAGGAGCAGGAagacgaggaggaggaagaTGGTCTCAACTAA
- Protein Sequence
- MGHASTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPPGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLAAINLLGIKSAISFETNPTAMTTTNVLSSAMAVEAAKSISGLQIANASLMEEEEEDANSVVGKLEMDTTVLANTQQHQQHHEQQQERTLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSASSVTKLGGAVNAAVMDAAAHSGQMVDDEVDADVNDDHDESESQLIEEEYGTAGDPLIEISADADMSEDVMQEVDAGEEEDDEELLDVKPRKSHLDIKMLKTKIRQRASPVKVSSKKAITKQHHHQVALKKEIKDDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYQRLKKGDSLKSISQDLHIPMSTLHRHKVRLASQGCLPDFVACRRRDSTPRDELRDKLAKAVHACITGGMSQNHAANLFEIPKSTLWRHLQRHVNERERKVKEEQEDEEEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_01328001;
- 80% Identity
- iTF_01327274;