Basic Information

Insect: Drosophila grimshawi
Gene Symbol: -
Assembly: GCA_018153295.1
Location: JAECXY010000044.1:18290536-18292847[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.5e-16 5.3e-13 48.2 0.0 2 45 377 420 376 420 0.95

2 3 0.04 84 2.7 0.0 28 37 450 459 449 464 0.90

3 3 1.7e-20 3.5e-17 61.6 0.0 2 42 486 526 485 528 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.5e-16	5.3e-13	48.2	2	45	377	420	376	420	0.95
2	3	0.04	84	2.7	28	37	450	459	449	464	0.90
3	3	1.7e-20	3.5e-17	61.6	2	42	486	526	485	528	0.96

Sequence Information

Coding Sequence: ATGAATCACCTCAGATGGATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCATCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGCGCCCATCTGTTCGTGCTAAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCGACTGGCCAGGAGGCAACAGTCATCCTGCCCGACATACGCGGCGAGCTCCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCCTGCTCTCCGAATTCCTCGAAGCCATCAATCTGCTGGGCATCAAGTCTGCCATTAGTTTTGAAACGAATCCAATAGCCATGACCAGCACAGATGTGATCAGCGGCGCTATGGCCATCGAGGCAGCAAAGTCAATTAGTGGATTGCAAATTGCAAATGCATCGCTTGTCGAGGAGGAGGAGGAAGAGGATGCTGGCGCGGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCTAATCCCCAGCAGCAACAGCATCACGATCAGCAGCAGGGACGAACGTTAGAGTTTCTTGATGTGTACAGTGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACTAGCAATGGCAATCAGTATATATTAACGGAGAACACGGGCACCTTCACCATTACACAATCGGCATCTTCCGTAAATAAATTGGGCGATACAGTTAATCCCGTAATGGATACAGCGACGCACAGCGGTGAACTGGTTGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGAATCCGAATCCCAGTTAATCGAGGAAGAGTACGGGGCATCCGCGGATCCTTTGATAGAGATCAGTGCAGATGCAGATGCCGATGCTGATATGACCGAGGATGTAATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGACGATGAAGAACTGCTGGATGTGAAGCCACGCAAATCCCACCTAGACATAAAAATGTTAAAAACAAAGGTACGCCAGCGCGCCACGCCCACAAAAGCTGCGTCCAAAAAAGCGATAACGAAACAGCATCAAGAGCATGTGGCACTGAAAAGGGAGCTCAAGGAAGATATCAATGATGCCCTTGATCTGGCCGCAGACGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCCAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTATCGGAGGCCTACGAACGTCTGAAGAACGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCACATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGACTGCCTGACTCCGTCGCCTGTCGGCGGCGAGACAGCACGCCCAAGGATGAGCTGCGCGACAAGCTGGCAAAGGCATTACATGCCTGCATCAGCGGTGGCATGTCACAGAACCATGCCGCGAATCTCTTCGAAATACCCAAGAGCACACTTTGGCGACATTTACAGCGACGCGTCACCGAAGCTGAGCGAAAAGTCAAGGAGGAGCAGGAGGAGGACGACGAGGAGGATGGGCTTAACTAA
Protein Sequence: MNHLRWMGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTDVISGAMAIEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQYILTENTGTFTITQSASSVNKLGDTVNPVMDTATHSGELVDDEVEADVTDDHDESESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEDDEELLDVKPRKSHLDIKMLKTKVRQRATPTKAASKKAITKQHQEHVALKRELKEDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDSVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00516912;
80% Identity: iTF_00514283;