Datr009359.1
Basic Information
- Insect
- Drosophila atroscutellata
- Gene Symbol
- -
- Assembly
- GCA_035041605.1
- Location
- JAWNLA010000105.1:6911069-6912694[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-16 6e-13 48.2 0.0 2 45 372 415 371 415 0.95 2 3 0.048 91 2.8 0.0 28 37 445 454 444 459 0.89 3 3 2.1e-20 4e-17 61.6 0.0 2 42 481 521 480 523 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTTCATCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGTGCCCATCTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAGGAGGCAACGGTCATCCTACCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCCTGCTCTCCGAATTCCTCGAAGCCATCAATTTGCTGGGCATCAAGTCCGCAATTAGTTTTGAAACAAATCCAATAGCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCTGTCGAGGCAGCAAAGTCTATTAGTggattgcaaattgcaaatgcatcgcttgtcgaggaggaggaggaagaagaTGCTGGCGCAGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAAtccccagcagcaacagcaacatcacgATCAGCAGCAAGGACGAACGTTAGAGTTTCTTGATGTGTACAGCGATCAGCCGAAAATAACGTATTCAATTGAGCATATGGGCGGCACCAGCAATGGAAGTCAGTTTATATTAACGGAGAACACTGGCACCTTTACCATTACACAGTCGGCATCTTCCGTAAATAAACTGGGCGAATCAGTTAATTCCGTAATGGACACGGCGACGCACAGCGGTGAACTTATCGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGGATCCGAATCCCAGTTAATCGAGGAGGAGTACGGGGCATCCGCCGATCCCTTGATAGAGATCagtgcagatgcagatgccgATGCTGATATGACTGAGGACGTGATGCATGAAGTGGGTGCCGGCGACGAGGAGGAAGAGGATGAAGAACTGTTGGATGTGAAGCCACGCAAATCCCACCTagacataaaaatgttaaaaaccAAGATACGCCAACGCGCCCCGCCCACAAAGGCGGCGTGCAAAAAAGTGATGACgaaacagcaccaacagcatGTGGCACTGAAAAAGGAGCTCAAGGACGATATCAATGATGCCCTCGATCTGGCCGCAGACGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGTTTTGACATATCGAAAACCGTATTATGGCGACGTGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTGTCGGAGGCCTACGAACGTCTGAAGAATGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCAAATACCGATGTCAACGCTGCACAGGCACAAGGTACGCCTGGCGGCCCAAGGACGCCTACCCGACTTCGTCGCCTGTCGGCGGCGAGACAGCACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCGTTGCATGCCTGCATTAGCGGTGGCATGTCCCAGAACCATGCCGCGAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGACATTTACAGCGTCGCGTCACCGAAGCGGAACGGAAAGTcaaggaggagcaggaggaggacgACGAAGAGGATGGTCTAAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPIAMTSTNVISGAMAVEAAKSISGLQIANASLVEEEEEEDAGAVVGKLQMDNTVLANPQQQQQHHDQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGSQFILTENTGTFTITQSASSVNKLGESVNSVMDTATHSGELIDDEVEADVTDDHDGSESQLIEEEYGASADPLIEISADADADADMTEDVMHEVGAGDEEEEDEELLDVKPRKSHLDIKMLKTKIRQRAPPTKAACKKVMTKQHQQHVALKKELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00482361;