Dmel002979.1
Basic Information
- Insect
- Drosophila melanocephala
- Gene Symbol
- -
- Assembly
- GCA_037043625.1
- Location
- JBAMBD010000038.1:3398173-3399807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-16 6e-13 48.2 0.0 2 45 375 418 374 418 0.95 2 3 0.062 96 2.7 0.0 28 37 448 457 447 462 0.90 3 3 2.6e-20 4e-17 61.6 0.0 2 42 484 524 483 526 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATCCAGCGCGTTCTGCTCCACCAGCAAAGCAACAATCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGCATCAGTGTGCGTGCGCATCTGTTTGTGCTGAGCACGTGCAGCGATCTGATGCGCAATCTCCTCGTCGATTTACCCACTGGCCAGGAGGCAACGGTCATCCTGCCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTGTCTTTCATTTATATGGGTGAAACGAGTTTGCCCTCTGCCCTGCTCTCCGAATTCCTCGAAGCCATCAATCTGCTGGGCATCAAGTCTGCCATTAGTTTTGAAACGAATCCAATATCCATGACCAGCACAAATGTCATCAGCGGCGCTATGGCCGTCGAGGCAGCAAAGTCAATTAGCggattgcaaattgcaaatgcatcGCTTatcgaggaggaggaggaagaggatgCTGGTGCGGTGGTTGGCAAACTTCAGATGGATAACACAGTGCTCGCCAATCcccagcagcaaaatcaacagcaacagcatcacgaacagcagcagggACGAACGTTAGAGTTTCTTGATGTGTACAGTGATCAGCCGAAAATAACGTATTCCATTGAGCATATGGGCGGCACTAGCAATGGCAATCAGTATATATTAACGGAGAACACGGGCACCTTCACCATTACACAATCGGCATCTTCCGTAAATAAATTGGGCGATACAGTTAATTCCGTAATGGACACAGCGACGCACAGCGGTGAACTGGTTGACGATGAAGTCGAGGCGGATGTCACCGATGATCACGACGAATCCGAATCCCAGTTAATTGAGGAGGAGTACGGGGCATCCGCCGATCCCTTGATAGAGATCAGTGCAGATGCAGATGTCGATGCAGATATGACCGAGGATGTGATGCATGAAGTGGGTGCCGGTGACGAGGAGGAAGACGATGAGGAACTGCTCGATGTGAAGCCACGTAAATCCCACCTAgacataaaaattttaaaaacaaagatACGCCAGCGCGCCACGCCCACAAAGGCTGCGTCCAAAAAAGCGATAACGAAACAGCATCAAGAGCATGTGGCATTGAAAAAGGAGCTGAAGGAAGATATCAATGATGCCCTTGATCTGGCCGCAGACGCTGTCCTCCACGAGGGACTGAGTCTGCAGAAGGCTGCCGATCGATTTGACATATCGAAAACCGTATTATGGCGACGGGTGCGCTCCAATCCGGCGTACATGCGAATCAAGCGAGAGAAGCCATCGCTATCGGAGGCCTACGAACGTCTGAAGAACGGCGACTCTCTGAAGAGCATCAGCCAGGATCTGCACATACCGATGTCAACGCTGCACAGGCACAAAGTACGCCTGGCGGCCCAAGGACGACTGCCCGACTTCGTCGCCTGTCGGCGGCGAGACAGTACCCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCATTACATGCCTGCATCAGCGGTGGCATGTCACAGAACCATGCCGCGAATCTATTCGAAATACCCAAGAGCACACTTTGGCGACATTTACAGCGACGCGTCACCGAAGCTGACCGAAAAGTcaaggaggagcaggaggaggacgaCGAGGAGGATGGGCTTAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPTGQEATVILPDIRGELLESMLSFIYMGETSLPSALLSEFLEAINLLGIKSAISFETNPISMTSTNVISGAMAVEAAKSISGLQIANASLIEEEEEEDAGAVVGKLQMDNTVLANPQQQNQQQQHHEQQQGRTLEFLDVYSDQPKITYSIEHMGGTSNGNQYILTENTGTFTITQSASSVNKLGDTVNSVMDTATHSGELVDDEVEADVTDDHDESESQLIEEEYGASADPLIEISADADVDADMTEDVMHEVGAGDEEEDDEELLDVKPRKSHLDIKILKTKIRQRATPTKAASKKAITKQHQEHVALKKELKEDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKALHACISGGMSQNHAANLFEIPKSTLWRHLQRRVTEADRKVKEEQEEDDEEDGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516912;
- 90% Identity
- iTF_00516912;
- 80% Identity
- iTF_00542545;