Amun023544.1
Basic Information
- Insect
- Anorthoa munda
- Gene Symbol
- -
- Assembly
- GCA_945859655.1
- Location
- CAMAOM010000403.1:683909-684429[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0047 94 3.9 1.8 11 16 13 18 11 20 0.83 2 5 0.19 3.8e+03 -1.2 2.1 12 15 33 36 32 37 0.93 3 5 2.4e-10 4.8e-06 27.2 3.5 4 22 53 71 51 71 0.91 4 5 0.85 1.7e+04 -3.3 6.5 10 15 83 88 82 90 0.84 5 5 2 4e+04 -5.1 1.2 6 9 92 95 91 95 0.72
Sequence Information
- Coding Sequence
- ATGTCTGATGACGGATCGACGGTCGTAGAGAAGAAAGGACGCGGTAGACCAAAAGCCAATGGAACACAATCGGAGGCCAAGAGTGATACCAAGAAAAGAGGGAGACCACCGGCACCAACCAGGACTAAGGAATCTACAAAATCATCGGATGATGAACAAGCTCCAGCAGCAAAACGAGGTCGAGGCAGGCCTAAGGGATCTAAGAAAAAGTCTGCTGCTAAAGGAAAGAGTGCACCAGTTGAAGGAAGGGGCCGTGGAAGACCGCGCAAGGACCCACCGCCTAAAAAAGATGCCGCCTCCACTGAAGAGGAACAGGACGAAGATGAAGATGACGAAGGCTCTGAAGAGCAGTAA
- Protein Sequence
- MSDDGSTVVEKKGRGRPKANGTQSEAKSDTKKRGRPPAPTRTKESTKSSDDEQAPAAKRGRGRPKGSKKKSAAKGKSAPVEGRGRGRPRKDPPPKKDAASTEEEQDEDEDDEGSEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072161; iTF_00809160; iTF_00810089; iTF_00771947; iTF_01538767; iTF_00274449; iTF_00273621; iTF_01119355; iTF_00049924; iTF_00111681; iTF_00794626; iTF_00677643; iTF_00345828; iTF_00858564; iTF_01429955; iTF_00820102; iTF_00429031; iTF_01010375; iTF_00290728; iTF_01358888; iTF_00428142; iTF_00819183; iTF_00341334; iTF_00787671; iTF_00063610; iTF_00859487; iTF_00709257; iTF_00908865; iTF_00072834; iTF_00012004; iTF_00146437; iTF_00013041; iTF_00720309; iTF_00640342; iTF_00006295; iTF_00279128; iTF_00931425; iTF_00931426; iTF_00889233; iTF_00932570; iTF_01075458; iTF_00236644; iTF_00235873; iTF_00157221; iTF_00636421; iTF_00404941; iTF_01166713; iTF_00736635; iTF_00008031; iTF_01220671; iTF_00637670; iTF_00441511; iTF_01436105; iTF_01197743; iTF_00364948; iTF_01073633; iTF_01125481; iTF_01502994; iTF_00347485; iTF_01071645; iTF_01124606; iTF_01360635; iTF_00823914; iTF_00318871; iTF_01264636; iTF_00425406; iTF_00282412; iTF_00000354; iTF_00041795; iTF_00281347; iTF_01532035; iTF_01062821; iTF_01063781; iTF_01340133; iTF_01487717; iTF_00040838; iTF_00123398; iTF_00648006; iTF_00018183; iTF_00449127; iTF_00785224; iTF_01029288; iTF_01180329; iTF_00001194; iTF_00711882; iTF_01094059; iTF_01064684; iTF_00017357; iTF_00300237; iTF_00831245; iTF_00850765; iTF_01230605; iTF_00445198; iTF_00783502; iTF_00851822; iTF_00172975; iTF_00364047; iTF_00951856; iTF_01152177; iTF_01173297; iTF_00120530; iTF_00185330; iTF_00302130; iTF_01527250; iTF_01377491; iTF_00928724; iTF_01179508; iTF_00186197; iTF_00147478; iTF_00745718; iTF_00121463; iTF_01061911; iTF_01285559; iTF_01221592; iTF_00907066; iTF_01028314; iTF_01094938; iTF_01526042; iTF_00071451; iTF_00177147; iTF_01260123; iTF_01441115; iTF_00327100; iTF_01031164; iTF_01338780; iTF_00784413; iTF_00952733; iTF_01118333; iTF_01342237; iTF_00888286; iTF_00906174; iTF_00042655; iTF_00383679; iTF_00924703; iTF_01093119; iTF_01425951; iTF_00622848; iTF_00907904; iTF_01192736; iTF_00112514; iTF_01026210; iTF_00043521; iTF_00036743; iTF_00038794; iTF_00375242; iTF_00758188; iTF_00726381; iTF_01117232; iTF_01027347; iTF_00685461; iTF_00450135; iTF_00039833; iTF_01425083; iTF_00171776; iTF_00124292; iTF_00947908; iTF_00973805; iTF_00122418; iTF_01534852; iTF_01533953; iTF_01085258; iTF_01533070; iTF_01084286; iTF_00114119; iTF_00187183; iTF_01312240; iTF_00113334; iTF_01076520; iTF_00382634; iTF_00301195; iTF_01361643; iTF_01362446; iTF_01363125; iTF_00037837; iTF_00284561; iTF_01316369; iTF_01317310; iTF_00448146; iTF_00823058; iTF_00706977; iTF_01030258; iTF_00683379; iTF_00682444; iTF_01491955; iTF_00869652; iTF_00034746; iTF_00374138; iTF_01502107; iTF_00237597;
- 90% Identity
- iTF_00301195;
- 80% Identity
- iTF_01119355;