Tjac002615.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tyria jacobaeae
Gene Symbol
-
Assembly
GCA_947561695.1
Location
OX387208.1:21104883-21118898[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.0014 0.12 13.4 5.0 1 23 203 225 203 225 0.98
2 32 0.0011 0.089 13.8 0.2 2 19 257 274 256 277 0.93
3 32 8e-05 0.0064 17.4 0.2 2 23 312 334 311 334 0.96
4 32 4 3.2e+02 2.6 0.2 2 20 351 369 350 370 0.87
5 32 0.00015 0.012 16.6 0.6 1 23 381 404 381 404 0.96
6 32 0.003 0.24 12.4 0.9 1 23 422 444 422 444 0.95
7 32 5.5e-05 0.0044 17.9 1.4 2 23 484 506 483 506 0.96
8 32 0.0015 0.12 13.4 6.0 2 23 544 566 544 566 0.97
9 32 0.003 0.24 12.4 0.3 1 23 616 639 616 639 0.97
10 32 0.00047 0.038 15.0 0.1 1 23 693 715 693 715 0.97
11 32 0.0032 0.26 12.3 5.7 1 23 726 748 726 748 0.98
12 32 0.0059 0.48 11.5 1.4 2 23 760 781 759 781 0.96
13 32 0.0028 0.22 12.5 1.4 1 23 791 813 791 813 0.98
14 32 0.0013 0.11 13.5 6.6 1 23 842 864 842 864 0.96
15 32 0.00052 0.041 14.8 4.0 1 23 875 897 875 897 0.98
16 32 8.6e-06 0.00069 20.4 0.6 1 23 905 927 905 927 0.98
17 32 0.00013 0.01 16.8 0.7 2 23 947 969 946 969 0.97
18 32 0.87 70 4.7 0.2 1 23 987 1009 987 1009 0.90
19 32 0.097 7.8 7.7 3.7 1 23 1016 1038 1016 1038 0.97
20 32 0.006 0.48 11.5 1.3 2 23 1049 1071 1048 1071 0.94
21 32 0.015 1.2 10.2 0.2 2 23 1094 1115 1093 1115 0.95
22 32 0.43 35 5.6 3.6 2 23 1158 1180 1157 1180 0.96
23 32 0.0088 0.71 11.0 0.2 2 23 1196 1217 1195 1217 0.95
24 32 7.3 5.8e+02 1.8 5.6 5 23 1227 1245 1225 1245 0.94
25 32 0.012 0.96 10.5 0.8 2 23 1256 1278 1255 1278 0.95
26 32 0.29 23 6.2 4.5 2 23 1295 1313 1295 1313 0.92
27 32 2 1.6e+02 3.5 1.7 2 21 1317 1336 1317 1337 0.92
28 32 3.3 2.6e+02 2.9 2.7 2 23 1359 1380 1359 1380 0.93
29 32 1.5 1.2e+02 3.9 0.6 2 23 1387 1408 1386 1408 0.93
30 32 0.00017 0.014 16.4 0.7 2 23 1419 1441 1418 1441 0.96
31 32 9.4 7.6e+02 1.4 0.5 3 23 1458 1475 1457 1475 0.76
32 32 1.8 1.4e+02 3.7 4.2 2 19 1479 1496 1478 1499 0.92

Sequence Information

Coding Sequence
ATGGCCCTCAAACTCGGAAAATGCAGGCTCTGCCTCAAACTTGGGGACTTCTACTCCATCTTTACGGTGGACAATTCTCTGCAGCTTGCAGAGATGGCAATGGAATGCGCTCGAATAAAAATTTACGACGGAGATGGACTACCAGATAAAGTGTGCTCAGAGTGCATACAGAAACTGAGTAGTGCTTATATATTCAAACAACAGTGTGAGCGCGCCGACCAGGAGTTGCGACGGAACTATGTGCCACCACCAGGATTCAGTATTAGTCCACCACCACCTAACAGACAGAGCAGTGACTCTGCCTTCTCAAATCATACTGACATCTCTAATCTTACCAAACCCTCGTCTTCCTTCGAAGAAAAAATATCTCCAGCGACCAGAACGCGGAAACGTAGCATAGAGAGTGATGGTAACACCTCAATAGGTGGTAGATCAAGTGAATTTAGACCAACCAGCTCAAAACGGGTGGAAGAACTTAGAAGTTCACAGAAAAAAAGGCCTCGTTTGCCATCTGAAAATACTTCACAGCCAGATTCTGATTATGAGGACAATAGTGGGTCATACTTGCCTGAAACGGACTCAGATGAGCCGCTTATGAAACACACCTTTAAATGCAAATTGTGCACAAAACAGTTTACATCTTGCAGAAGCTTGGCTAATCACTCTAGAGTACACAGGAAAAGCATTGAGAAGACACTTGAAGTAAATGCCTTTGAAGACAAACCAAAGAAAAGTATCGAGGATGCTGCAGACGTGGAAGATAAGCTAAGTTGTGATAAGTGTGATAAAACCTTCAAACTGAAAATAATGCTGAAACGTCATGCTGATGTGTGTGGGAAAACACCTGTTAAATCAGCGCAGAAGGAGCTGCTAATATCGTTAGAACCTATAGATGCTAAGCAAAATTTACCACAAGAGACTGTTATCTCTATTTCATGTGAATATTGCGTTGCGAAGTTCAAGACTTTGGATAACTTAGCAAAACATATGAAAGTGGTTCATGCAGCTGTTTTGAAGAGAGAAACCGATAAAAACAGAAAAGTGCCAGTTCCTTGCTTGTATTGTAACAAATTGTTTGATGACTATTACCAACACAACGCGCATATTGTTGAATGTCCGCAGATGGATGAGTCAAAGCCATTCGCATGTCCTGTGTGTGGCAAACTGACGTCTAGAAAGACGTCATATAACCAGCATATTAGGAACATGCATTTTGAGCCTCGTGTATCGATCGTGGAGACGGAACCTGAAGTGCAGGAATACCACGAGTGTCGGGTGTGTTCGAAGAAACTGGCATCCAAAGAACAGCTAATAAGGCATTTGTCTGCGCACGTGTCTAATATCCAGGATGATGGCATAGCTGACAATGAGTCCAGGGCAAGCACTCTGGATGATGCAGAATCTATTCACTCAGTGCAAAGCAACACATATCCAGCTGCAAGCATACTGAAATGTGATGTTTGTGACAAGGAGTTTAAATATAAAAAAGCTCTCTTAACACATCAGCAAAAATATCATACAGATGCCCCTATTGAAATAAAAGTCGAACCACCTGATAAAGCTTCCACAAGTTTTTTAAGTGAGAAGCAATACCGCTCCGAATCAGAATCTAGTCAGGAAGAAGATAATACTTGCGATATTTGCGAGAAACATTTCTCATACAAACGTCTCTTGATCCACCACAAGAGGACCAAGCACAACATGAGTTCAGGACACAAACGCGCCAAGATCTACCTCAAGGACTGCTCCGTCCGCTGTCTCATCTGCGACTTACAAATGAAAGTCGGTGACATAAACGAACACAATCAGAAGCATATTGCAAAGAATATAAAACCTAGAAATCTGTACACCTGTGCGGAATGCGAAGCCACATTTAAGGCGTGCAGTGCACTTGCAACTCATATCAAACTGGTACATAGATTGAAACAAAAAGTTGAAATGAATATTGTAAATCCGTCGGATTTTTGTGAAGTCGTTGTGACCAAGTCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGGGAGGTTCCGATTGAACAGGACGGCAAGCCAATGGTGGACCTGAGCGGCTTTACGTGTCCCATCTGTGGCAAGAAGATGCCCACTCTGATATCGCTCAAGAGACACGTGAATTGGCACACTAACGTTGGCAAGAGCTTAGAAAAAAAATACGAGTGCTTTGTTTGCAATGAGGCATTCAGATTCCAATGTCACTACAAGCTGCACATGCGCGAGCACTACACGGATACAAACCTGGATCCCAGGCACCTAACTTGCACTATCTGTGGCCGTAAGAGCAAACATCTGCGCGCCGTTCAAGCGCATATGAACTTCCACAAACAAACCCGCTTCAAGAACAAAGATTACCAGTGCTCCATCTGCGAAAGAGTATTCCAACACAGAAAAGTATACCTCTCACACATGGCCATACACTACAAGAGAGGAGATAGCGTTCAGAACACCATAGTCGGTGACGCTTTACCTAACAACATGGACAAAAAAGCTTTCGACGGCTCTCACACTTGCCAGCACTGTGGCAAGGTTTGCGATTCTGAAAGTTCCCTAAAACATCATCTCATATGGCACACATCTAAGACTTTCCTATATGGCGCTCGACACGAGTGCAAAATTTGCAAAGTCAAGTTCACCAACAAGAGACGACTCGAAATCCACACTAGAACGCACTACGAGGATGATAATGGCCCCTACAAGTGTAACATCTGTGGTAAAGGGTACACAGACGAAGGCTACTTCAAGAGACACGTCAAGGGACATAATTTCGACCACCAGTCGCACAAAAAGAGAATAGAGAACATCAGGAAGGATAAAGTAAAGTGTCCAATATGTTCGCGGTTTTACAAGGACCTAGTCAAACTAATTCGTCATCTTAGACGGACGCATCCTGAGAGCAAAATGATCAAATCTGACCCGGATGCGCCCCCACAACCGTACTTTTCATGTAAACTATGCGCTAAAGTGTTTCTGGATGAACGTAGACTTCAAGCACACGAAGAAGCGCACTTGAGGAAGCCAGAGTTCTTCAAATGTAAATTCTGCGGGAAAAAGACTATATCGTTGAAAAATCACCGAGTTCACATAAAGGGTCACTTGACACAGAAATATATAGACAATCCTTTGAAGTGTCCGCACTGCGAAGAGACGTTCGGGCGAGGCTACGACTTGCACTACCACGTGCGGGACGTTCACGGCATCGAGGAGACGTGGATCGCCGAGCGCACAGAGCAGCGTCTCGCCGGCCCGCTCAAGGACCTGCAGTGCTCCATCTGCATGAAGGTGCTCGCCAGTAAAGGCAACTTCGAGCGCCACCTCGACTATCACAATTCGCTGAGATGCAACTACTGTTTCGATTACTTCAGCTCCCTCAGGTTCTTAGAGGGTCATCTAGCATTTTCATGTGATAAAAAGAAACTTTTAGGGGACACGGAGATTTATCCCAAGAAAATAAAATGTCATATATGTTACAAACCCTTCTATGTTCAGGTTAAGCTAGATTGTCACCTGCGCACACAGCACGGCATCAAGGTGCACAGGGAAGCTTCGTCGGGCAAAAAAGAAATCGTCTGTGATTATTGCTTCAAGGTATTCGAGAATGATTATGCTCTGTCCACTCACAAAATTTACCATCGCACTGTTGGATATTTTGGATGTATTTATTGTAAGCGAAAGTTTAACACGATGACTCTATACCGGAAACACAAGAATCATCATTTCGCACAGATGAACGCAGACGAGCCGACGAAGTGCGAACATTGTGATGAGACATTTGTAGCTTTCAGAGACATGATTTATCACATGAGGGACGTCCACGGCGACGATAAAGACTGGGTGACGATGCCCAAGGAATCCATAGAGGAAACATGTAAAATCTGTAACAAAACATTCTACAACTTGCATAGGCATTTGACATATCACGAAGAAAATAGGTGTAGAAAATGTGGCGAGTATTTCTTCTCTACAGCTGATTTTGATAACCATCTGTGCTCCATAGAGAGTGACGAGGAGGAGGCTGCCAATGGAGACAATACCTTCGAACGACCTAAGTATGAGGAGTGCAGCTTTTGCTTCAAACCAACCACCAGGAAAAGTTCTAAAGCTATGCACGAACACATTCACAAGGGATCAGGTTCTATATCCTGTAGGTTCTGCGTGCTAAAGTTTAAGACTATGGATGCTTTCAACATCCACGCTTTCTCGCACCGAAGCAGAAAATACAACAAGAAACCCATTAAGTGCAAGAAATGCGGTGAGAAATTTGTTAAGTATGGGCTTTTCATAAAGCACATGAAACTAGTTCACAAGTCTTTGAAAAAGATGCATTACAGAGCAATGGTAAAGCCGGAGCTGTGCGTGGTGTGTGGTGAAGACTTCCCCAACCTACACAATCACTACCGCGCTCACCTTCTCAACCAATGCCAGTCTTGTCACAAATACTTTACCTCCTCTAAACTTTTCTCTTTGCATGAGTGTGATAAAGAAGACTCTGATCCTTCTAAAGTGTTTACCTGTGATGCGAGTTTGAACGAACTGATAAACGCTTATGTCCCTAAAGATTTGAAGGATGATGAGAAGTATTATGGCAACACTGACGACGAAGAAGATGAAGAAGATACGTTTGCTCAAGTGTGTGGTGAAGACGAAGAGAGTCAGGAAGACAAGCACGTGGATTTCAAAGATATTGACATTGATGAAAAGGATATAACTAGTCAACCATTATCTATTCAGTCACCAATCATATCTGATGTTTTGTCACTGTACCAGAAGGAAATGAACCCCACAGTCGTAGACGATGATGTTGTGAACCTAACTGATGACGATTCTGATGTGGACCATGTAGTCCAAAACTATAATGAGACTATAGTAATTGATGATGATGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNSLQLAEMAMECARIKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDISNLTKPSSSFEEKISPATRTRKRSIESDGNTSIGGRSSEFRPTSSKRVEELRSSQKKRPRLPSENTSQPDSDYEDNSGSYLPETDSDEPLMKHTFKCKLCTKQFTSCRSLANHSRVHRKSIEKTLEVNAFEDKPKKSIEDAADVEDKLSCDKCDKTFKLKIMLKRHADVCGKTPVKSAQKELLISLEPIDAKQNLPQETVISISCEYCVAKFKTLDNLAKHMKVVHAAVLKRETDKNRKVPVPCLYCNKLFDDYYQHNAHIVECPQMDESKPFACPVCGKLTSRKTSYNQHIRNMHFEPRVSIVETEPEVQEYHECRVCSKKLASKEQLIRHLSAHVSNIQDDGIADNESRASTLDDAESIHSVQSNTYPAASILKCDVCDKEFKYKKALLTHQQKYHTDAPIEIKVEPPDKASTSFLSEKQYRSESESSQEEDNTCDICEKHFSYKRLLIHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLQMKVGDINEHNQKHIAKNIKPRNLYTCAECEATFKACSALATHIKLVHRLKQKVEMNIVNPSDFCEVVVTKSEPLDWIQSHNDFGEVPIEQDGKPMVDLSGFTCPICGKKMPTLISLKRHVNWHTNVGKSLEKKYECFVCNEAFRFQCHYKLHMREHYTDTNLDPRHLTCTICGRKSKHLRAVQAHMNFHKQTRFKNKDYQCSICERVFQHRKVYLSHMAIHYKRGDSVQNTIVGDALPNNMDKKAFDGSHTCQHCGKVCDSESSLKHHLIWHTSKTFLYGARHECKICKVKFTNKRRLEIHTRTHYEDDNGPYKCNICGKGYTDEGYFKRHVKGHNFDHQSHKKRIENIRKDKVKCPICSRFYKDLVKLIRHLRRTHPESKMIKSDPDAPPQPYFSCKLCAKVFLDERRLQAHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIDNPLKCPHCEETFGRGYDLHYHVRDVHGIEETWIAERTEQRLAGPLKDLQCSICMKVLASKGNFERHLDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLLGDTEIYPKKIKCHICYKPFYVQVKLDCHLRTQHGIKVHREASSGKKEIVCDYCFKVFENDYALSTHKIYHRTVGYFGCIYCKRKFNTMTLYRKHKNHHFAQMNADEPTKCEHCDETFVAFRDMIYHMRDVHGDDKDWVTMPKESIEETCKICNKTFYNLHRHLTYHEENRCRKCGEYFFSTADFDNHLCSIESDEEEAANGDNTFERPKYEECSFCFKPTTRKSSKAMHEHIHKGSGSISCRFCVLKFKTMDAFNIHAFSHRSRKYNKKPIKCKKCGEKFVKYGLFIKHMKLVHKSLKKMHYRAMVKPELCVVCGEDFPNLHNHYRAHLLNQCQSCHKYFTSSKLFSLHECDKEDSDPSKVFTCDASLNELINAYVPKDLKDDEKYYGNTDDEEDEEDTFAQVCGEDEESQEDKHVDFKDIDIDEKDITSQPLSIQSPIISDVLSLYQKEMNPTVVDDDVVNLTDDDSDVDHVVQNYNETIVIDDDD