Slub002304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spilosoma lubricipeda
Gene Symbol
-
Assembly
GCA_905220595.1
Location
HG992275.1:4423242-4430075[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 7.8e-05 0.0077 17.6 3.5 1 23 252 274 252 274 0.99
2 30 0.00086 0.084 14.3 0.3 2 19 306 323 305 326 0.94
3 30 1.3e-05 0.0012 20.1 0.1 2 23 361 383 360 383 0.96
4 30 0.00035 0.034 15.6 1.6 1 23 430 453 430 453 0.97
5 30 0.0026 0.25 12.8 1.5 1 23 471 493 471 493 0.95
6 30 6e-05 0.0059 17.9 1.3 2 23 528 550 527 550 0.96
7 30 0.00065 0.064 14.7 4.5 2 23 590 612 590 612 0.97
8 30 0.0036 0.35 12.4 0.3 1 23 662 685 662 685 0.97
9 30 0.00055 0.054 14.9 0.1 1 23 739 761 739 761 0.97
10 30 0.0084 0.83 11.2 6.2 1 23 772 794 772 794 0.98
11 30 0.028 2.7 9.6 1.2 2 23 806 827 805 827 0.96
12 30 0.0033 0.32 12.5 1.4 1 23 837 859 837 859 0.98
13 30 0.021 2 10.0 6.4 1 23 888 910 888 910 0.96
14 30 0.00061 0.06 14.8 4.1 1 23 921 943 921 943 0.98
15 30 1.4e-05 0.0014 20.0 0.7 1 23 951 973 951 973 0.98
16 30 0.00055 0.054 14.9 0.6 2 23 993 1015 992 1015 0.97
17 30 1 1e+02 4.6 0.2 1 23 1033 1055 1033 1055 0.90
18 30 0.11 11 7.6 3.7 1 23 1062 1084 1062 1084 0.97
19 30 0.007 0.69 11.4 1.3 2 23 1095 1117 1094 1117 0.94
20 30 0.018 1.8 10.2 0.2 2 23 1140 1161 1139 1161 0.95
21 30 8 7.9e+02 1.8 5.6 2 23 1204 1226 1203 1226 0.95
22 30 0.01 1 10.9 0.2 2 23 1242 1263 1241 1263 0.95
23 30 0.016 1.6 10.3 0.7 2 23 1302 1324 1301 1324 0.95
24 30 0.012 1.2 10.7 2.4 2 23 1341 1359 1341 1359 0.96
25 30 0.69 68 5.2 1.9 2 21 1363 1382 1363 1383 0.93
26 30 4.7 4.6e+02 2.6 2.0 2 23 1406 1427 1406 1427 0.93
27 30 1.8 1.7e+02 3.9 0.6 2 23 1434 1455 1433 1455 0.93
28 30 0.0002 0.02 16.3 0.7 2 23 1466 1488 1465 1488 0.96
29 30 6.3 6.2e+02 2.1 0.4 3 23 1505 1522 1504 1522 0.76
30 30 0.68 67 5.2 4.2 2 20 1526 1544 1525 1546 0.92

Sequence Information

Coding Sequence
ATGGCCGTCAGAGTCGTTAGGGGTTATCGCACGATCTCCTACGAGGCAGCTTGCGTACTGGCCGGATCTCCGCcctgggacctggaggcaaaagtcCTCGCGTCACTACATTGGTGGCGTGAGGACGCGCGGACTCGCGGCGAGGGACTGACGCATCGAAGTGTCGAGCTGCGTCGGTCACAGCTGCGAGAGGTCCTGGTGGCGGAATGGCGGGACAGACTTTTAAGTCCTTCCGCCGGCCTCGTCACTATCGAGGCCATCCGGCCAATATACGATGGAGATGGACTTCCAGACAAAGTTTGTTCAGAATGCATACAGAAGCTAAGTAGTGCTTATATATTCAAACAACAATGTGAGCGAGCAGACCAGGAGTTGCGGCGTAACTATGTTCCACCACCAGGATTCAGTATCAGTCCACCGCCACCAAACAGACAGAGTAGTGACTCTGCCTTCTCAAATCATACTGACATCTCGAATCTTACCAAACCGTCGTCTTCctttgaagaaaaaatatctCCCCCAACCAGAACGCGGAAACGTAGTGTGGAGAGCGATGGAAACGTCTCAATGGGTGGTCAATCTAGTGATTTCAGACCAACCAGCTCCAAGCGAATTGAAGAACTTAGAAATTCTCAAAAAAAGAGACCTCGTTTGCAATCTGAAAACACTTCACAACCAGACTCTGATTATGAGGACAATAGCGGTTCATACTTACCTGAAACTGACTCGGATGAACCACTTATAAAGAACACATTCAAATGCAAGTCATGTCCGAAACAGTTTACAAGTTGCAGAAGTCTGGCTAACCACATTAGAATTCACACTAAAAGCAATAGTAAGACACCAGACGTAGGTGCCGTTGTAGAAGAACCAAAGAAGAGTATCGAGGATGCTGCAGATGTCGAAGATAAGCTGAGCTGTGATAAATGTGGAAAAACTTTCAAActgaaaataatgttaaaacgtcACTCCGATGTGTGCTTGAAAACACCTGTTAAATCGCCGCAGAAGGAACTGCTCATATCCCTGGCGCCTATAGACGCTAAACCAATCGCACCGCAACCAACTGTTACAACAATACCGTGTGAATATTGCGTAGCTACGTTTAAAACTCAGGATAACTTAGCGAAACATATGAAAGTGGTTCACGCGGCGGTTCTGAAGAGAGAAGCTGAAGCAAACAGAAAGGTGCCGGTTCCTTGCTTGTATTGCGACTTAATGTTCGATGACTATCACCAACATAATGCGCACTTTGTCGAATGTCCAAAGTTGGATGAGTCCAAGCCATACGTGTGCCCTGTATGTGACAAATTTACGACGAGGAGAACTTCATACTACCAACATCTTAGGAACATGCACTTTGAACCTCGCGTTTCGTACGTAGAGCCGGAAATTGAAATGCACGAATACCACGAGTGTCGCGTGTGTTCGAAGAAGTTATCTTCTAAGGAACAACTGATCAAGCACTTGTCCGCTCATGTGTCCAATATCCAGGATGATGGCACACTTGATAATGACAGGGATGATACCGATTCTATAAAATCAGTACAAAGCAATACATATCCAGCTGGAGGCCCATTGAAATGTGATGTTTGTGATAAGGAATTTAAGTACAAAAAAGCTTTGTTAACGCATCAACAAAGATATCACACAGATACCCCCCTCGTCGAAGTAAAAGTCGAACCGCCCGATAAAGCTTCCACAAGTCTTTTGAGCGAGAAACAATATCGCTCAGACTCCGAATCTAGTCAGGAAGAAGAAGACAACACATGCGATATTTGCGAGAAACGTTTCTCCTACAAACGTCTCTTGCTACACCACAAGAGGACAAAGCATAACATGAGCTCAGGCCACAAACGCGCCAAGATCTATCTCAAGGACTGCTCCGTCCGCTGTCTCATCTGCGATCTGCAAATGAAAGTGGGCGCCATAAATGAGCACAACCAAACGCACATTGCGAAGAATATGAAACCTAGAAACCTGTACACGTGTGCGGAATGCGAAGCCACGTTTAAAGCGTGTAGTGCACTTGCAACTCATATAAAACTAGTACATAGATTAAAACAGCAAGTGGAAATCAATATGGTAAATCCGTCGGATTTTTGTGAAGTCGTTGTGACAAAGTCGGAACCGCTGGACTGCATCCAGAGTCACAACGACTTTGGTGAGGTTCCGATTGAGCAGGACGGCAAGCCACTGGTAGACCTGAGTGGCTTCACGTGTCCTATCTGTGGGAAGAAGATGCCCACACTGATATCACTGAAGAGACACGTGAATTGGCACACTAACGTTGGCAAGAACTTGGAAAAGAAATACGAGTGCTTTGTCTGCAAAGAGgcTTTTAGATTCCAATGTCACTACAAGCTACACATGCGCGAGCACTACACGGACACAACTCTGGATCCGAGACACCTTACGTGTACCATCTGCGGACGCAAGAGCAAACACCTACGGGCCGCTCAAGCGCACATGACCTATCACAAACAAACACGCTTTAAGAACAAAGACTATCAATGCTCCATTTGCGAAAGAGTATTCCAGCACAGAAAGGTATATCTCTCCCACATGGCCATACATTACAAGAGAGGAGAAAGTGTTCAAAACACTATCGTAGGTTCCGTCTTACCTAACAATGTCAACAAGAACACTTTCGACGGAACCCACACCTGCATGCACTGCGGTAAAGTCTGCGACTCTGAAAATTCTCTAAAACATCATCTCATTTGGCACACATCTAAGACTTTCTTATATGGGGCTCGGCACGAGTGCACGATTTGTAAAATCAAATTCACTAATAAGAAACGACTCGAACTTCACACGAGAACGCACTATGAAGACGACAATGGGCCCTACAAGTGCAACATATGTGGTAAAGGATACACCGACGAAGGCTACTTCAAAAAACATGTCAAGGGCCACAATTTCGATCACCAATCGCATAAAAAGAGGATAGAAAACATCAGAAAGGATAAAGTGAAGTGTCCAATATGCTCCCGGTATTACAAAGACCTAATCAAACTTATCCGGCATCTCAGACGGACGCATCCGGAGAGTAAGATGATCAAGACAGACCCGGATGCGCCAGCACAACCTTACTTTTCATGTAAATTATGCGCTAAAGTGTTCCTGGATGAGAGAAGGCTTCAAGCCCATGAAGAAGCTCATTTAAGGAAGCCAGAGTTCTTTAAATGTAAGTTCTGCGGAAAGAAGACAATATCATTAAAGAATCACAGAGTCCACATCAAGGGTCATCTGACACAGAAGTATTTAGACAACCCTCTAAAATGTCCGCACTGTGAAGAGACGTTCGGGCGAGGCTACGACCTCCACTACCACGTGCGCGACGTCCACGGCATCGAGGAGACTTGGATCGCAGACCGCACCGAGCAGCGCCTGGCCGGCCCGCTCAAGGACCTGCAGTGCTCCATCTGTATGAAGGTCCTCGCCAGCAAAGGAAACTTCGAGCGCCACCTCGACTATCATAATTCTTTAAGATGCAACTACTGTTTTGATTACTTCAGCTCCCTCAGGTTCTTAGAGGGTCATCTCACGTTTTCATGTGATAAAAAGAAACTTTTAGGTGACACGGAGATTTATCccaagaaaataaaatgtcacGTATGTTACAAACCCTTCCACGTCCAGGTCAAACTAGACTGTCATCTGCGCACTCAACACGGTATCAAAGTGAACAAAGAAGCTTCGTCAGGGAAAAAAGAAATCGTCTGTGATTATTGCTTTAAAGTGTTCGAGAATGATTATGCTCTGTCTACACACAAAATTTATCATCGCACTGTTGGATTCTATGGGTGCATTTACTGCAAGCGAAAGTTTAACACGATGACTGTATACCGAAAACATAAGAATCACCATTTTGCGCAGCTGAATGTAGACGACCCGAACAAGTGCGAACATTGTGACGAGACATTCGTAGCCTTCAGAGACATGATTTATCATATGAGGGATGTCCATGGTGATGATAAAGACTGGGTGACGATGCCCAAGGAATCGATAGAGGAAACATGCAAAATCTGTAATAAAACATTCTACAATTTGCAAAGACATCTTATGTATCATGAGGAAAACAGGTGCAAAAAGTGCGGCGAATATTTCTTTTCTACGGCTGATTTCGATAACCATCTGTGCTCTATAGAAAGCGACGACGACGAGAACGCTAACGGTGTGGACAGCACCATCGAAAAACCTAAGTACGAGGAGTGCGGCTTCTGCTTTAAACCTACCACCAGGAAAAGTTCTAAAGCGATGCACGAACACATCCACAAGGGCTCGGGTTCTATATCGTGTAGGTTCTGTGTACTCAAATTCAAGACAATGGACGCGTTTAACATCCATGCCTTCTCACACCGAAGCAGAAAATATAACAAGAAGCCGATAAAGTGCAAGAAATGTGGTGAAAAATTCGTTAAGTATGGGCTTTTTATAAAGCACATGAAACTCGTGCATAAGTCGTTGAAAAAGATGCATTATAGAGCCATAGTGAAGCCGGAGCCGTGCGTGGTGTGCGGCGAAGATTTCCCCAACCTGCACAACCATTACCGCGCGCACTTGCTCAACCAATGCCAGTTATGTCACAAATACTTCACATCCTCTAAACTGTTCTCGATGCACGAATGTAACAAAGAAGACTCCGATCCTTCTAAAGTGTTCATTAGTGATGCAAGTTTGAATGAACTGATAAACTCGTACGTCCCTAAAGATTTAAAAGACGATGAGAAATATTATGGCAACACTGACGACGAAGAAGAGGAAGAAGATGCGGATTTTCAGGTGTGCGGTGAAGATGAAGAGAGTCAAGACGGTAAGGACATTGATATCAAAGACATTGATattgatgaaaataatataaccagCCAACCGTTGTCTATCCAATCACCAATTATATCTGATGTGTTGTCACTCTACCAGAAGGAAATGAATCCCGGAGTCGTGGACGATAATATCGTGAACTTAACCGATGATGATTCTGACGTGGACCACGTAGCCCAGAATCATACAGATACTATAGTTATTGATGATGACGATTGA
Protein Sequence
MAVRVVRGYRTISYEAACVLAGSPPWDLEAKVLASLHWWREDARTRGEGLTHRSVELRRSQLREVLVAEWRDRLLSPSAGLVTIEAIRPIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDISNLTKPSSSFEEKISPPTRTRKRSVESDGNVSMGGQSSDFRPTSSKRIEELRNSQKKRPRLQSENTSQPDSDYEDNSGSYLPETDSDEPLIKNTFKCKSCPKQFTSCRSLANHIRIHTKSNSKTPDVGAVVEEPKKSIEDAADVEDKLSCDKCGKTFKLKIMLKRHSDVCLKTPVKSPQKELLISLAPIDAKPIAPQPTVTTIPCEYCVATFKTQDNLAKHMKVVHAAVLKREAEANRKVPVPCLYCDLMFDDYHQHNAHFVECPKLDESKPYVCPVCDKFTTRRTSYYQHLRNMHFEPRVSYVEPEIEMHEYHECRVCSKKLSSKEQLIKHLSAHVSNIQDDGTLDNDRDDTDSIKSVQSNTYPAGGPLKCDVCDKEFKYKKALLTHQQRYHTDTPLVEVKVEPPDKASTSLLSEKQYRSDSESSQEEEDNTCDICEKRFSYKRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLQMKVGAINEHNQTHIAKNMKPRNLYTCAECEATFKACSALATHIKLVHRLKQQVEINMVNPSDFCEVVVTKSEPLDCIQSHNDFGEVPIEQDGKPLVDLSGFTCPICGKKMPTLISLKRHVNWHTNVGKNLEKKYECFVCKEAFRFQCHYKLHMREHYTDTTLDPRHLTCTICGRKSKHLRAAQAHMTYHKQTRFKNKDYQCSICERVFQHRKVYLSHMAIHYKRGESVQNTIVGSVLPNNVNKNTFDGTHTCMHCGKVCDSENSLKHHLIWHTSKTFLYGARHECTICKIKFTNKKRLELHTRTHYEDDNGPYKCNICGKGYTDEGYFKKHVKGHNFDHQSHKKRIENIRKDKVKCPICSRYYKDLIKLIRHLRRTHPESKMIKTDPDAPAQPYFSCKLCAKVFLDERRLQAHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYLDNPLKCPHCEETFGRGYDLHYHVRDVHGIEETWIADRTEQRLAGPLKDLQCSICMKVLASKGNFERHLDYHNSLRCNYCFDYFSSLRFLEGHLTFSCDKKKLLGDTEIYPKKIKCHVCYKPFHVQVKLDCHLRTQHGIKVNKEASSGKKEIVCDYCFKVFENDYALSTHKIYHRTVGFYGCIYCKRKFNTMTVYRKHKNHHFAQLNVDDPNKCEHCDETFVAFRDMIYHMRDVHGDDKDWVTMPKESIEETCKICNKTFYNLQRHLMYHEENRCKKCGEYFFSTADFDNHLCSIESDDDENANGVDSTIEKPKYEECGFCFKPTTRKSSKAMHEHIHKGSGSISCRFCVLKFKTMDAFNIHAFSHRSRKYNKKPIKCKKCGEKFVKYGLFIKHMKLVHKSLKKMHYRAIVKPEPCVVCGEDFPNLHNHYRAHLLNQCQLCHKYFTSSKLFSMHECNKEDSDPSKVFISDASLNELINSYVPKDLKDDEKYYGNTDDEEEEEDADFQVCGEDEESQDGKDIDIKDIDIDENNITSQPLSIQSPIISDVLSLYQKEMNPGVVDDNIVNLTDDDSDVDHVAQNHTDTIVIDDDD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01502316;
90% Identity
iTF_00157409; iTF_00824065; iTF_00441766; iTF_00823272; iTF_00707190; iTF_01198007;
80% Identity
-