Lsal005513.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucoma salicis
Gene Symbol
-
Assembly
GCA_948253155.1
Location
OX411805.1:5048275-5066393[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.009 0.84 10.9 0.6 1 23 200 223 200 223 0.96
2 28 0.00084 0.079 14.2 1.0 2 20 255 273 254 275 0.93
3 28 0.92 86 4.6 0.1 3 23 325 346 323 346 0.95
4 28 0.00044 0.041 15.1 2.0 1 23 393 416 393 416 0.97
5 28 0.024 2.2 9.6 0.1 1 23 441 463 441 463 0.96
6 28 0.00011 0.01 17.0 0.7 1 23 502 525 502 525 0.95
7 28 0.0018 0.17 13.2 2.1 2 23 563 585 563 585 0.97
8 28 0.0091 0.85 10.9 0.5 1 23 635 658 635 658 0.97
9 28 0.00098 0.092 14.0 0.2 1 23 712 734 712 734 0.97
10 28 0.012 1.1 10.5 7.1 1 23 745 767 745 767 0.98
11 28 0.018 1.7 10.0 1.2 2 23 779 800 778 800 0.96
12 28 0.0024 0.22 12.8 1.8 1 23 810 832 810 832 0.98
13 28 0.9 84 4.7 7.0 1 23 862 884 862 884 0.93
14 28 4.6e-05 0.0043 18.2 2.0 1 23 895 917 895 917 0.98
15 28 8.8e-06 0.00082 20.4 0.6 1 23 925 947 925 947 0.98
16 28 0.00011 0.011 16.9 0.3 2 23 967 989 966 989 0.97
17 28 4.2 3.9e+02 2.6 0.2 1 22 1007 1028 1007 1029 0.80
18 28 0.12 11 7.4 3.7 1 23 1036 1058 1036 1058 0.97
19 28 0.0015 0.14 13.4 2.4 2 23 1069 1091 1068 1091 0.95
20 28 0.016 1.5 10.2 0.2 2 23 1114 1135 1113 1135 0.95
21 28 7 6.5e+02 1.9 5.6 2 23 1178 1200 1177 1200 0.95
22 28 0.0091 0.85 10.9 0.2 2 23 1216 1237 1215 1237 0.95
23 28 3.3 3.1e+02 2.9 4.1 5 23 1247 1265 1244 1265 0.94
24 28 0.012 1.2 10.5 0.8 2 23 1276 1298 1275 1298 0.95
25 28 0.21 19 6.7 4.4 2 23 1315 1333 1315 1333 0.95
26 28 0.69 64 5.0 1.1 2 20 1337 1355 1337 1357 0.91
27 28 0.54 50 5.4 0.7 2 23 1408 1429 1407 1429 0.93
28 28 0.00087 0.081 14.1 0.9 2 23 1440 1462 1439 1462 0.96

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGGCTTTGCCTCAAGCTTGGGGATTTCTACTCCATCTTCACGGTGGACAACTCATTGCAGTTGGCAGAAATGGCAATGGAATGTGCCAATGTGAAAATATATGATGGAGATGGGCTACCCGACAAAGTATGCTCAGAATGTATACAAAAGCTCAGCGGTGCTTACATATTCAAGCAGCAGTGCGAGCGCGCTGACAAGGAACTGCGAAGAAACTATGTTCCCCCTCCGGGTTTTAGTATCAGTCCACCACCTCCCAATAGGCAGAGTAGTGATTCTGCATTCTCAAACCACACCAATAGTTCAACCTTCACCAAACCCTCGTCTTCCATTGAAGAAAAAATATCGCCAGCTGCGAGAAGTCGAAAGCGAAGCATTGAGAGTGATGGTAATATTTCAGTAGGTGGCTCCAGTGATTTTAGACCCACTAGCACAAAACGAGTAGAAGAACTTAGAAAATCGCAAAAGAGACAGCGCTTGCAGTCTGAAAATAACTCTCAACAAGACTCAGATTACGAAGATACCAGTGGATCTTGTCCACCGGAATCTGATTCTGATGAACCTTTGTTAAAAAATTTTAAATGCAAGATTTGTCTCAAAGAATTTCCAGCATACAAAAACCTCGCCATTCACACAACGAGGATGCATGGGATAAAACCAGATGAGCCCCTCGGAAAAGATGCTGTCGTTGATATACCGAAAAAAAATAACGGGGATGCCGACGACGTAGAGGACAAATTGACCTGCGACAAATGTGACAAGACATTCAAACTGAAGATTATGTTGAAACGTCACCACGACGTATGTGGAAAAACGCCGCTCAAGTCGCCTCAGAAAGAGTTGCTCGTATCCTTGGAGCCTATAGATGCCAAACATAACATGCCGAACATACCAACTCCTACCAATATTACCAAACAAGACATCCCTACTGCAACTACTAATACCATCGCCTGTGAATATTGCTTAGGCAAGTATAAATCACGCGAGATCTTAGCGAAACATATGAAAATTGTTCATGCGGCAGTTTTGAAAAAAGTGGCTGAACCAAACAAAAAAGTGCCAGTACCATGCTTATATTGCAACCAATTATTCGATGATTACTTCGTGCATAATGCTCATTTTGTTGAATGCCCTAAAGCAGATGAGACTAAACCGTTTGAATGTCCTGTGTGTCAAAAATTTACATCTAGAAAGACTTCTTACTATCAACATATAAGAAACATGCACTTTGAGCCACGGGTTACGAATGCGGAGCCTCGGCTTACGAATGCGGAGTCTGAGGTAGAGTCGCATGAAAGCTATGAATGTCGGATGTGCTTCAAGAAGCTCCCGTCACAAGACGCCCTAATCGAGCATCTGACGGCCCATGTTTCCAAGATCCAGGAAGATAATGTTGCCGATAATGAATCCAGGGCAAGCACCTTGGACGACGCTGCTTCTATACATTCAGTCCAAAGCAACACTTACCCTGCGTCCGCCGATTACAACTGTGACGTATGCGGTAAGGAGTTCAAATACAAAAAAGCTCTTGCAACACATAAGGCGAAAAGCCATACAGAAGTTCCTATTGAAGTGAAGATTGAGCCTCCTGATAAAGCTTCCACAAGTCTCATGGGCGAGATGCAATATCGCTCTGAATCAGAATCTAGTCAAGAGGAAGATAATACGTGCGATATTTGCGAAAAGCGGTTCTCATATAGACGTGTGTTACTGCAACACAAGAGAACGAAACACAATATGAGCTCGGGGCACAAACGCGCTAAAATCCACTTGAAGGACTGTCTAGTTCGCTGCCTCATCTGCGACATAGAAATGAAGGTCAGCGCTATAAATGAACACAATCAAAAACATATAGCAAAGAATTTAAAGCCTAGAAACTTGTATACTTGTGCGGAGTGTGAAAGCACATTTAAAGCATGCAGTGCACTGGCCACTCATATTAAATTAGTGCACAGATTGAAACAGAAAGTAGAAGAAAATATGGTGAATCCGTCGGATTTTTGTGAGGTCGTTGTGACAAAGTCGGAACCTCTGGATTGGAACCAGGGTCACAACGACTTTGCCAAGGTTCCGGACGATAACGATAGCAAACCTCTAGTAAATCTGAGTGGGTTTACATGTCCCATATGTGACAAGAAGATGCCGACGTTGATCTCGCTTAAGAGACATGTCAACTGGCATACAAATGTTGGGAAGAATATTGAAAAGAAATATGAATGCTTTGTGTGCAAAGAGATGTTCAGATTTCAGTGCCACTACAAATTGCACATGCGTGAACACTACACGGATACGAACCTGGACCCCGCGCACCTCACATGTAACATCTGCGGCCGCAAGAGTAAGCATCTTCGGGCAGCGCAGGCCCACATGACCTACCACAAGCAGACGCGCTTCAAGAACAAAGACTACCAGTGTTCCATATGTGAGAGGGTCTTCCAGCACAGGAAGGTGTACCTCTCCCACATGCTCATACATTACAAAAGAGGTGAAAGCGTGCAGAATACGATCGTCGGTAGCATAGCGGTACATAATAATGTCGACAAAGTGGCGTATGATGGCACTCACACTTGCCAGCATTGTGGTAAAGTCTGTGACTCCGAGAATTCCTTGAAGTGCCATCTCATTTGGCACAATTCCAAAACGTTCCTGTACGGTGCACGCCATGAGTGCCCCATATGTAAAGTTAAATTTACCAACAAGAGACGTCTGGAAATCCACCTGAGAACACATTACGAAGATGAGAATGGTCCTTACAAATGTAACATATGTGGTAAAGGTTACACCGACGAGGGTTACTTTAAAAGACACGTCAAAGGTCACAACTTTGACAATCAGTCTCATAAAAAGAGAATAGAGAAACTTCGTAAAGACAAAGTAAAGTGTCCCATATGTCCGCGATACTATAAAGACTTGGTGAAATTAATCCGTCATTTGCGGCGCACGCACCCCGAAAGTAAAATGATCAAAACTGATCCGGATGCTCCTCCGCAACCATTTTTCTCGTGCAAACTCTGCGCCAAGGTATTCCTTGAAGAGCGTCGCCTCCAAGCTCATGAAGAGGCACATTTGCGGAAGCCAGAATTCTTTAAATGCAAGTTCTGTGGAAAGAAAACAATTTCTCTGAAAAATCATAGGATACACATCAAGGGCCATTTAACGCAAAAGTACATTGACAATCCATTGAAATGTCAGCATTGCGACGAGACTTTTGGACGGGGCTACGACTTGCATTACCACATGCGTGACGTGCACGATATTGAAGAGACGTGGATCGCCGAACGGACAGAACAGCGTCTAGCTGGCCCGCTCAAAGATCTGCAGTGCTCCATATGTATGAAGGTGCTTGCTAGCAAGGGGAACTTCGAGAGACATCTCGATTATCACAACTCGCTTAGATGCAATTATTGCTTTGATTACTTCAGCTCGCTAAGGTTCCTAGAAGGTCATTTGGCGTTTTCGTGTGATAAGAAAAAGTTGTTAGGCGACACAGAGACTTATCCGAAAAAAATAAAATGTCACGTCTGTTATAAGCCTTTCCACGTACAAGTGAAGCTAGACTGCCACTTGCGCACTCAGCATGCCATTAAAATATGCAGAGAAGCCTCATCTGGTAACAAAGAGATTGTCTGCGACTACTGCTTTAAAGTGTTTGAAAACGATTACGCTTTGTCTACACATAAGATTTACCATCGTACTATAGGCTACTATGGATGCATTTATTGCAAGAGAAAGTTTAACACTATTACGCTCTACCGAAAACACAAGAACCACCATTTCGCACAGCTAAATGTCGATGATCCAACCAAATGTGAGCATTGCGATGAAACATTTGTAGCATTTAGAGACATGATATACCACATGAGAGATGTCCACGGGGACGACAAAGATTGGATCACATTGCCCAAAGAATCCATCGAGGAGACTTGTACCATCTGTAATAAGAGTTTCTTCAATTTACACAGACATATGAGTTACCACGAGGAGAACAGGTGTAAGAAGTGCGGCGAATATTTTTTCTCGACGGCAGATTACGACAATCACCTGTGCGCCATAGAGAGTGATGATGAAGTGAACAGCAACGCGAACTCGTATGCCGACGCACAAGCTCAATATGAAGAATGCACCTTCTGCTTCAAACCTATCACTAGAAAGAGTTCTAAAGCGAAGCACGATCATATACACAAAGGATCCGGTTCAATCTCATGTAGGTTCTGCTCGCTTAAATTCAAGACTATAGATGCTTTCAACATACACGCATTCTCACATCGAAGCAGAAAGTATAATAAACGGCCCATCAAATGTAGGAAATGCGGAGAGAAGTTTATTAAATATGGACTGTTCATGAAGCATATGAAACTTATACATAAATCTATGAAGAAGATGCATTACAGGGCAGTAGTGAAGCCGGAGCCGTGTATGATATGTGGCGATGAGTTCCCCAACTTGCATAATCATTACCGCGCCCACATGAACAACCAGTGTCAGTCGTGCCGCAAATATTTTACTTCCTCTAAAGTTTTCTCTCATCATGAATGTGACAAGGAAGACTCGGATCCTACCAAAGTGTTTACATGCGACTTGAAATTAAAAGACCTTATAAACTCGTATGTTCCCCAAGATTTGAAGGACGATGAGAAATATTACGGGCGCTCTGACGACGAAGATGAGGAGGAGGAAGTACTTTCGCAAACAGCCGGAGATGACGAGAGCCAAGACTTCAAAGATTTCAAAGATATTGATATTAATGAGGAAATGCCTATTCAACCGATATCCATTCAGTCGCCGATAATATCAGACGTGTTATCTTTGTACCAGAAAGAGATGACTCCAAATGCTGTGGATAATTATACTGTCAATGATAATATTGTGAACCTAACAGATGATGACTCCTTGGATGTGGACCATGTTGTCCAAAACACTGAACCGATTGTAATTGACGATGATGATTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNSLQLAEMAMECANVKIYDGDGLPDKVCSECIQKLSGAYIFKQQCERADKELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTNSSTFTKPSSSIEEKISPAARSRKRSIESDGNISVGGSSDFRPTSTKRVEELRKSQKRQRLQSENNSQQDSDYEDTSGSCPPESDSDEPLLKNFKCKICLKEFPAYKNLAIHTTRMHGIKPDEPLGKDAVVDIPKKNNGDADDVEDKLTCDKCDKTFKLKIMLKRHHDVCGKTPLKSPQKELLVSLEPIDAKHNMPNIPTPTNITKQDIPTATTNTIACEYCLGKYKSREILAKHMKIVHAAVLKKVAEPNKKVPVPCLYCNQLFDDYFVHNAHFVECPKADETKPFECPVCQKFTSRKTSYYQHIRNMHFEPRVTNAEPRLTNAESEVESHESYECRMCFKKLPSQDALIEHLTAHVSKIQEDNVADNESRASTLDDAASIHSVQSNTYPASADYNCDVCGKEFKYKKALATHKAKSHTEVPIEVKIEPPDKASTSLMGEMQYRSESESSQEEDNTCDICEKRFSYRRVLLQHKRTKHNMSSGHKRAKIHLKDCLVRCLICDIEMKVSAINEHNQKHIAKNLKPRNLYTCAECESTFKACSALATHIKLVHRLKQKVEENMVNPSDFCEVVVTKSEPLDWNQGHNDFAKVPDDNDSKPLVNLSGFTCPICDKKMPTLISLKRHVNWHTNVGKNIEKKYECFVCKEMFRFQCHYKLHMREHYTDTNLDPAHLTCNICGRKSKHLRAAQAHMTYHKQTRFKNKDYQCSICERVFQHRKVYLSHMLIHYKRGESVQNTIVGSIAVHNNVDKVAYDGTHTCQHCGKVCDSENSLKCHLIWHNSKTFLYGARHECPICKVKFTNKRRLEIHLRTHYEDENGPYKCNICGKGYTDEGYFKRHVKGHNFDNQSHKKRIEKLRKDKVKCPICPRYYKDLVKLIRHLRRTHPESKMIKTDPDAPPQPFFSCKLCAKVFLEERRLQAHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCQHCDETFGRGYDLHYHMRDVHDIEETWIAERTEQRLAGPLKDLQCSICMKVLASKGNFERHLDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLLGDTETYPKKIKCHVCYKPFHVQVKLDCHLRTQHAIKICREASSGNKEIVCDYCFKVFENDYALSTHKIYHRTIGYYGCIYCKRKFNTITLYRKHKNHHFAQLNVDDPTKCEHCDETFVAFRDMIYHMRDVHGDDKDWITLPKESIEETCTICNKSFFNLHRHMSYHEENRCKKCGEYFFSTADYDNHLCAIESDDEVNSNANSYADAQAQYEECTFCFKPITRKSSKAKHDHIHKGSGSISCRFCSLKFKTIDAFNIHAFSHRSRKYNKRPIKCRKCGEKFIKYGLFMKHMKLIHKSMKKMHYRAVVKPEPCMICGDEFPNLHNHYRAHMNNQCQSCRKYFTSSKVFSHHECDKEDSDPTKVFTCDLKLKDLINSYVPQDLKDDEKYYGRSDDEDEEEEVLSQTAGDDESQDFKDFKDIDINEEMPIQPISIQSPIISDVLSLYQKEMTPNAVDNYTVNDNIVNLTDDDSLDVDHVVQNTEPIVIDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01502316;
90% Identity
-
80% Identity
-