Scos001982.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schrankia costaestrigalis
Gene Symbol
-
Assembly
GCA_905475405.1
Location
FR997826.1:4227051-4236567[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00054 0.066 15.0 0.5 1 23 202 225 202 225 0.96
2 28 0.00048 0.059 15.1 0.4 2 20 252 270 251 272 0.93
3 28 2.5e-05 0.0031 19.2 1.0 2 23 307 329 306 330 0.95
4 28 2.1 2.6e+02 3.7 0.3 2 19 345 362 344 364 0.79
5 28 1.2 1.5e+02 4.4 3.0 1 23 375 398 375 398 0.90
6 28 0.0083 1 11.2 1.1 1 23 415 437 415 437 0.96
7 28 8.4e-05 0.01 17.5 0.9 1 23 475 498 475 498 0.97
8 28 0.0012 0.15 13.9 4.2 2 23 536 558 536 558 0.97
9 28 0.0035 0.43 12.4 0.3 1 23 608 631 608 631 0.97
10 28 0.0084 1 11.2 0.2 1 23 684 706 684 706 0.97
11 28 0.017 2.1 10.3 7.1 1 23 717 739 717 739 0.97
12 28 0.23 29 6.7 1.2 2 23 751 772 750 772 0.95
13 28 0.0043 0.53 12.1 0.5 1 23 782 804 782 804 0.98
14 28 0.0058 0.72 11.7 6.6 1 23 833 855 833 855 0.97
15 28 0.0015 0.19 13.5 3.9 1 23 866 888 866 888 0.98
16 28 1.8e-05 0.0022 19.6 0.7 1 23 896 918 896 918 0.97
17 28 0.00056 0.069 14.9 0.4 2 23 938 960 937 960 0.97
18 28 0.045 5.5 8.9 0.7 1 23 978 1000 978 1000 0.94
19 28 0.13 16 7.5 3.7 1 23 1007 1029 1007 1029 0.97
20 28 0.0073 0.9 11.4 4.5 2 23 1040 1062 1039 1062 0.94
21 28 0.018 2.3 10.1 0.2 2 23 1084 1105 1083 1105 0.95
22 28 1.8 2.2e+02 3.9 3.1 2 23 1148 1170 1147 1170 0.95
23 28 0.0026 0.32 12.8 0.2 2 23 1186 1207 1185 1207 0.95
24 28 0.015 1.9 10.4 0.8 2 23 1246 1268 1245 1268 0.95
25 28 0.45 56 5.8 4.9 2 23 1285 1303 1285 1303 0.94
26 28 0.68 84 5.2 2.2 2 22 1307 1327 1306 1327 0.93
27 28 0.00036 0.044 15.5 0.6 2 23 1407 1429 1406 1429 0.96
28 28 5.3 6.5e+02 2.4 0.6 2 23 1445 1463 1445 1463 0.77

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGGCTATGCCTCAAGCTTGGGGATTTCTACTCCATCTTCACGGTGGACAATTCGTTACAATTGGCGGAGATGGTGATGGAATGCACCCGGGTGAAAATTTACGACGGGGATGGATTACCTGATAAAGTATGCTCTGAATGTATACAGAAGCTTAGCAGTGCTTATATATTCAAACAACAATGTGAGCGCGCTGATGAAGAGCTACGAAGGAATTATATACCACCTCCAGGTTTTAGCATCAGTCCCCCACCTCCAAACAGACAGAGTAGTGACTCTGCTTTCTCAAATCATACAGACAGTTCTAATGTCACTAAGCCTTCGCCTTCTATAGAAAAAAAGGCATCTCCTGCAGTCAAGGCTAGAAAACGTAGCATAGAAAGTGACGGTAACACCTCAATAGGAGGACGGTCAAGTGATTACAGACCAAGTAGCTCGAAACGCGTTGAAGAACTCAGAAATTCGCAAAAGAGGCCTCGTCTCCAATCTGGCAATACCTCTCAACCAGACTCAGACTATGAAGATAACAGTGGCTCGTACATACCTGAAACTGATTCTGACGAACCATTACTTAAGAACAATTTTAAATGTCTAAGCTGTCCCAAAGAGTTCATTTCATCAAGAAATCTTAACATTCATACTGCTAGAATGCATGGTAAGAAAGAAGAACATACAGTATTAGAAACACCAACTAAAAATACCGAGGATGCAACTGATGTGGAGGACAAGCTAACCTGTGAAAAATGTGACAAAACATTTAAACTGAAGATTATGTTAAAGCGCCATTACGAGGTATGCAGTAAAACACCAGTGAAATCACCTCAGAAAGAATTATTGATAACTTTGGAACCTATTGACGCTAAACAGAGTACACCACTCACTACTGTCATTACTATTACTTGTGAATATTGCTCAGCTAAATTCAAGACTCTGGACAACCTGGCTAAGCACATGAAGGTGGTACATCATGCGGTTTTAAAGAGagaaaacacaaacaaaaaagTGCCTGTTCCTTGCCTATATTGTCAGAAAATGTTTGACAATTATAAAGAACACAATTCGCATGTTATGGCGTGTCCAAAATTAGATGAGTCAAAGCCATATGAATGTCCCCTTTGTAATAAATTAGTGTCGCGTAAATTGTCATACTTTCAACATTGTAGAAATATGCACTTTGAGCCTCGTATGGTTGTAGGAAATGATATCGATCAGCAGCAATATCACGAGTGTAGGATGTGCCAAAAGAAATTGGCATCACAGGAACTGCTTATCAAGCACTTATCAGAGCATGTCTCGAGTTTAGAAGATGACGGTATTGACAACGAATCAAGaGGTAGTTTTGCAGATGATGCTGCATCAGTTCAATCAGTACAAAGCAATAGTTACCCTGGAAGCGGTCCATACAAGTGTGAAGTATGTAGTAAAGAGTTCAAATACAAGAAAGCCTTAGAAACTCATGAAATGAAAGCTCATACAGAGGTACCAGTTAAAGTTAAGACGGAACCTCCTGACATAGCCTCCACAAGTCTTCTCAATGAGAAGAAGTATCGGTCTGAATCTGAATCTAGTCAAGAAGAGGACAACACTTGCGATATTTGTGAGAAACAATTTTCTTACAAACGTCTCTTGCTTCATCACAAGAGAACGAAACATAACATGGGATCAGGACATAAGAGAGCCAAGGTGTACCTCAAGGACCATTCGGTCCGATGCCTCATTTGTGATATTGAAATGAAAGTGGCAGATATTAATAATCACAATCAAACTCATATTAAAAAGAACATAAGGCCTAGGAACCTGTATACCTGTGCAGAATGCGAGGCGACATTTAAAGCTTGCAGTGCACTTGCAACACATATTAAACTAGTTCATAGATTAAAACAAAAGGTAGAAGAGGATATGGTCAATCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAGTCGGAACCCCTGGACTGGAGCCAGAGTCACAACGACTTTGGAGAGGTTCCGATTGAGGGAGGAAAGCCGCTCGTCGATCTGAGCGGTTTCACATGTCCCATATGTGAGAAGAAGATGCCAACACTCTTATCACTCAAGAGACATGTTAACTGGCACACTAATGTAGGCAAGAGCTTGGAGAAGAAATATGATTGCTTTGTTTGTAAAGAGTCGTTCAGGTTCCAGTGTCACTACAAGCTGCACATGCGCGAGCACTACAGCGACACTAACCTGGACCCCGCGCTGCTCACCTGCGCCATCTGCGGACGTAAGAGCAAACACCTCCGAGGTGCGCAGATGCACATGAACTTCCACAAGCAGACTCGCTTTAAAAACAAAGACTACCAGTGCTCCATATGCGAGAGAGTCTTCCAATATCGTAAAGTATATCTATCTCACATGGCTATACACTACAAGAAAGGCGACAGTGTACAGAACACTATTGTAGGAGATTATTTACCTAACAATGCTGATAAAACAGTATTTGATGGCACGCATACTTGCCATCTTTGTGGGAAAATTTGTGACTCCGAGTCCTCCCTGAAGCATCACGTCAACTGGCACACGTCAAAAACTTTCTTGTACGGAGATCGACATGAGTGTCAAATATGTAAGGTGAAGTTTACTAACAAGAGACGACTGGAGTTACATACCAGGACACATTACGAGGATGACAATGGACCATTCAAGTGTACCATTTGTGGTAAGGGTTACACTGATGAGGGATACTTTAAAAGACACGTCAAGGGGCATAACTTTGACCATCAATGCCATAAAAAGAGAATAGAGAAGATCAGGAAAGACAAAGTAAAATGTCCTATATGTTCACGTTACTATAATGATTTGGTGAAACTTATTCGTCACTTACGAAGGACTCACCCTGAGAGTAAGATGATCAAAACAGATCCCGATGCCCCTCCACCTGCTTACTACTCATGTAAGCTGTGCGCAAAGGTTTTCCATGACGAACGAAGATTACAAGCACATGAAGAAGCACATTTAAGAAAGCCCGAGTTCTTTAAATGCAAGTTCTGTGGAAAGAAAACAATATCATTGAAAAATCACAGAATTCATATAAAAGGACATCTCacacagaaatattttgatAATCCTTTGAAGTGTCACCACTGTGAGGAGACATTCAGTCGCGGCTACGACCTGCATTACCACGTACGTGACGTGCACGGCATTGAGGAGACGTGGATAGCCGAGCGGACCGAGCAAAAGGCCGGGCCACTTAAGGACTTGCAGTGTTCTATCTGTATGAAAGTATTAGCCAGCAAAGCTAACTTCGAACGACATCTCGATTATCACAATTCTCTGCGTTGTAACTACTGTTTCGATTACTTCAGCTCGCTAAGATTCCTTGAAGGACATTTATCATTTTCCTGTGAAAAGAAGAAACTATTAGGTGATACTGAGATATAtccaaagaaaataaaatgtgatATTTGTTACAAACCCTTCCACGTTCAAGTGAAGCTCGATTGCCACTTACGTACTCAACACCAAATTAAAATTCGGAAGGAAGCGTCATCAGGGAAGAAGGAGATTGTTTGTGACTATTGCTTTAAAGTATTTGAGAATGAATATGCTCTTTCTACACACAAAATATACCATCGCACTGTTGGGTACTACGGATGCATTTATTGTAAGAGGAAATTTAATACGATGACTGTTTACAGAAAGCATAAGAACCATCACTTGTCACAGCTAAATGTAGACGAGCCGACAAAGTGCGAACACTGTGACGAAACATTTGTAGCGTTCAGAGAGATGATATATCACATGAGAGACGTGCACGGAGATGACAAAGAGTGGGTCACCATGCCCAAGGAAGACAAGGAAGAGACTTGCACTATCTGCAATAAAACATTCTTCAACTTGCACAGACATATGACCTACCACGAAGAAACTAGATGTAAGAAATGCGGCGAATATTTCTTCTCAACCGTAGATTTTGATAATCATTTGTGTACCATAGACAGTGATGACGAAGACACAAGTGTAACCACGATCGAGCGGCCCAAGTATGAGGAGTGTAGCTTCTGCTTCAAACCTATCACCAGGCAGAGTTCTAAGGCGAAGCACGATCATATACACAAGTGCGCAGGATCCATATCTTGCAGATTCTGCACACACAAGTTCAAGACTATGGATGCATTCCATATACACGCTTTCTCTCATCGTAACAGAAAGTACAATAAGAAGCCAATAAAATGCAGGAAGTGTGGTGAAAAATTCGTTAAATATGGTCTATTTATAAAGCACATGAAAATAATACACAAGGCTTTGAAGAAAATGCACTACAGGGCGTTAGTGAAGCCGGAAACTTGTGTCGTGTGCGGGGAAGACTTCCCAAACCTTCACAACCATTATCGCGCTCACCTGCTCAACCAGTGCCAGTCTTGTTTGAAGTATTTTACATCATccaaattattttctttgcaCGATTGCAACAAGGAAGACTCTGATACAACAAAAGTGTTCACATGTGATGCTAACTTGAACGAATTGATCAACACTTATGTTCCGAAAGACTTGAAGGATGATGAGAAGTACTACGGGCACACAGACGATGAAAGTGACGACGATGAAGATGTGACGGTAATACAAGTAGTTGGGGAAGATGATGAAGAAGAACAAGACTGTAAAGATTTCAAACAGAATGGCAATGATGATATTGATATTGATAATCACGATCTTCCGATTCCATTATCTATCCAATCCCCTATAATATCTGATGTACTATCTCTCTACCAGAAGGAGATGACTCCTGCCGTCGTAGACGATAACATAGTGAGCCTCACTGACGACGACGACGATGATGTCAACCATATTGCTCCGGTACAGTCCGACGCAATAGTTATTATTGACGATGATGACGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNSLQLAEMVMECTRVKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADEELRRNYIPPPGFSISPPPPNRQSSDSAFSNHTDSSNVTKPSPSIEKKASPAVKARKRSIESDGNTSIGGRSSDYRPSSSKRVEELRNSQKRPRLQSGNTSQPDSDYEDNSGSYIPETDSDEPLLKNNFKCLSCPKEFISSRNLNIHTARMHGKKEEHTVLETPTKNTEDATDVEDKLTCEKCDKTFKLKIMLKRHYEVCSKTPVKSPQKELLITLEPIDAKQSTPLTTVITITCEYCSAKFKTLDNLAKHMKVVHHAVLKRENTNKKVPVPCLYCQKMFDNYKEHNSHVMACPKLDESKPYECPLCNKLVSRKLSYFQHCRNMHFEPRMVVGNDIDQQQYHECRMCQKKLASQELLIKHLSEHVSSLEDDGIDNESRGSFADDAASVQSVQSNSYPGSGPYKCEVCSKEFKYKKALETHEMKAHTEVPVKVKTEPPDIASTSLLNEKKYRSESESSQEEDNTCDICEKQFSYKRLLLHHKRTKHNMGSGHKRAKVYLKDHSVRCLICDIEMKVADINNHNQTHIKKNIRPRNLYTCAECEATFKACSALATHIKLVHRLKQKVEEDMVNPSDFCEVVVAKSEPLDWSQSHNDFGEVPIEGGKPLVDLSGFTCPICEKKMPTLLSLKRHVNWHTNVGKSLEKKYDCFVCKESFRFQCHYKLHMREHYSDTNLDPALLTCAICGRKSKHLRGAQMHMNFHKQTRFKNKDYQCSICERVFQYRKVYLSHMAIHYKKGDSVQNTIVGDYLPNNADKTVFDGTHTCHLCGKICDSESSLKHHVNWHTSKTFLYGDRHECQICKVKFTNKRRLELHTRTHYEDDNGPFKCTICGKGYTDEGYFKRHVKGHNFDHQCHKKRIEKIRKDKVKCPICSRYYNDLVKLIRHLRRTHPESKMIKTDPDAPPPAYYSCKLCAKVFHDERRLQAHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYFDNPLKCHHCEETFSRGYDLHYHVRDVHGIEETWIAERTEQKAGPLKDLQCSICMKVLASKANFERHLDYHNSLRCNYCFDYFSSLRFLEGHLSFSCEKKKLLGDTEIYPKKIKCDICYKPFHVQVKLDCHLRTQHQIKIRKEASSGKKEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCKRKFNTMTVYRKHKNHHLSQLNVDEPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVTMPKEDKEETCTICNKTFFNLHRHMTYHEETRCKKCGEYFFSTVDFDNHLCTIDSDDEDTSVTTIERPKYEECSFCFKPITRQSSKAKHDHIHKCAGSISCRFCTHKFKTMDAFHIHAFSHRNRKYNKKPIKCRKCGEKFVKYGLFIKHMKIIHKALKKMHYRALVKPETCVVCGEDFPNLHNHYRAHLLNQCQSCLKYFTSSKLFSLHDCNKEDSDTTKVFTCDANLNELINTYVPKDLKDDEKYYGHTDDESDDDEDVTVIQVVGEDDEEEQDCKDFKQNGNDDIDIDNHDLPIPLSIQSPIISDVLSLYQKEMTPAVVDDNIVSLTDDDDDDVNHIAPVQSDAIVIIDDDDD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01502316;
90% Identity
-
80% Identity
-