Pful005253.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720173.1:18918817-18927840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00053 0.057 14.9 0.1 1 23 201 224 201 224 0.96 2 31 0.00028 0.03 15.8 0.4 2 20 256 274 255 276 0.93 3 31 0.00069 0.075 14.5 0.3 2 23 311 333 311 333 0.97 4 31 6.4 6.9e+02 2.1 0.1 2 10 350 358 349 367 0.87 5 31 0.0035 0.37 12.3 4.2 1 23 380 403 380 403 0.97 6 31 0.063 6.8 8.4 1.1 1 23 422 444 422 444 0.95 7 31 0.00039 0.042 15.3 1.2 2 23 484 506 483 506 0.95 8 31 0.0062 0.67 11.5 6.0 2 23 545 567 545 568 0.96 9 31 0.0025 0.27 12.8 0.2 1 23 617 640 617 640 0.97 10 31 0.00051 0.055 15.0 0.1 1 23 694 716 694 716 0.97 11 31 0.00062 0.067 14.7 3.4 1 23 727 749 727 749 0.98 12 31 0.012 1.3 10.7 1.2 2 23 761 782 760 782 0.96 13 31 0.0062 0.67 11.5 0.9 1 23 792 814 792 814 0.98 14 31 0.098 11 7.8 5.0 1 23 838 860 838 860 0.96 15 31 0.00078 0.084 14.4 3.5 1 23 871 893 871 893 0.98 16 31 3.3e-05 0.0036 18.7 2.3 1 23 901 923 901 923 0.98 17 31 0.00053 0.057 14.9 0.4 2 23 943 965 942 965 0.97 18 31 0.94 1e+02 4.7 0.2 1 23 983 1005 983 1005 0.90 19 31 0.12 13 7.5 3.7 1 23 1012 1034 1012 1034 0.97 20 31 0.0045 0.49 12.0 1.9 2 23 1045 1067 1044 1067 0.95 21 31 0.026 2.8 9.6 0.1 2 23 1090 1111 1089 1111 0.95 22 31 9.8 1.1e+03 1.5 5.9 2 23 1154 1176 1153 1176 0.94 23 31 0.0025 0.26 12.8 0.2 2 23 1192 1213 1191 1213 0.95 24 31 0.6 65 5.3 5.5 3 23 1221 1241 1219 1241 0.96 25 31 0.014 1.5 10.4 0.9 2 23 1252 1274 1251 1274 0.95 26 31 1.1 1.2e+02 4.4 7.0 2 23 1291 1309 1291 1309 0.95 27 31 0.58 62 5.4 1.3 2 21 1313 1332 1313 1333 0.92 28 31 2.7 2.9e+02 3.3 2.3 2 23 1354 1375 1354 1375 0.93 29 31 0.48 52 5.6 0.9 2 23 1382 1403 1381 1403 0.93 30 31 0.00074 0.08 14.5 0.9 2 23 1414 1436 1413 1436 0.96 31 31 6.9 7.4e+02 2.0 2.5 2 16 1474 1488 1474 1493 0.85
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTTTACTCCATCTTCACAGTGGACAACTCCTTGCAGTTGGCCGAGATGGCAATGGAATGCGCCAAAGTGAAAATTTACGACGGAGATGGCCTGCCAGATAAAGTGTGCTCAGAATGCATACAGAAACTCAGTAGTGCTTATATATTCAAGCAACAATGCGAACGCGCTGATCAGGAACTACGAAGAAACTATATACCACCGCCagGGTTCAGCATTAGCCCACCGCCTCCCAACAGACAAAGTAGCGACTCAGCATTCTCAAATCACACCGACACCTCTAACCTCACCAAGCCTTTGTCTTCTGTAGAAGATAAGATAACACCTACTTCCCGAAGAAAACGGAGCATTGAGAGCGAAGGCAACACCTCGGTAGGTGGCCACTCTAGTGACTACAAACCTTCTAGATCCAAACGAGTCGAGGAACTTCGAAACTCGCAAAAAAGACCGCGTTTACAGTCCGATAACACTTCGCAGCCAGACTCCGATTACGAAGACAACAGTGGCTCGTACGTACCCGAAACTGATTCAGATGAACCTCTGTTGAGCAATACTTTTAAATGTAAGATATGTGACAAAGGATTCGCAGCGTCCAAGAATGTCGCCATCCACATAGCTAGGGTGCACGGCAAGAAGTTTAATAATTCTCTTGGCGAAGATGCAGTCGTCGATATACCAAAGAGTAACAGTGAGGACGCTGCCGACGTAGAGGACAAGCTTAGCTGTGACATATGCGGGAAAAGCTTCAAACTAAAGATCATGCTCAAGCGTCACCACGACGTTTGTGGTAAGACACCAGTGAAATCTCCACAAAAGGAATTGTTGATATCCTTGGAACCGATTGATGCCAAACAAATACAAACGCCTGTAGTCAAAGATCCAAATACCTGTGAATATTGTTCAGCCAAGTTTAAGCAAATAGAAGGGCTCGCTAGACACATGAAGTCGATTCACGCCGCAGTTTTAAAAAGAGATCCGCAGCCGAATAGAAAAGTGCCAGTCCCTTGCCTGTactgtaataaaatgtttgatGCCTATCAGGAACACAACTTGCATATCACACAGTGTCCGAAGCTGGACGTAAATAAGCCGTTTGAATGTCCCGTGTGTCACCGGGTGACGTCTAGGAAAATGTCGTATTGTCAACATGTAAGGAACATGCACTTTGAGCCTCGTGTGTTGCACGTTGAGAATGAAGTGGAGTGTGGCCCTGAGTACCACGAGTGTCGGATGTGCATGAAGAAGTTATCGTCGCAGGAGCAGTTGATCAAGCACTTGGCGGAGCACGTGTCCAATATCGAGGAGGAACGCGCTGCTGGTAATGTATCCAGagcAAGCACTGCAGATGATAGGGCATCTGTGCAATCAGTACAAAGTAATAGTTATCCTGCGAGCGGCCCTCTTAAATGCAATGTGTGTGATAAGGAGTTCAAATACAGAAAAGCTCTGGTTACTCACGAACAGAAGTTCCATACCGATATTCCTATAGAAGTAAAGACAGAACCACCCGATAAAGCTTCCACAAGCCTTCTAAACGAGAAGCAATACCGCTCAGAGACGGAATCTAGTCAGGAAGAAGACGACAACACCTGCGATATTTGCGAGAAACAATTCTCGTATAGACGTTTGTTACTACACCACAAGAGGACGAAACACCACATGAGCTCGGGGCACAAACGCGCCAAGATCTATTTAAAAGACTGTTCGGTGCGTTGCCTCATCTGCGACCTCGAAATGAAAGTCGGTGCCATAAACGAACACAATCAGACGCATATATCAAAGAATATAAAGCCCAGAAACCTGTACACGTGCGCAGAATGCGAAGCCACGTTCAAGGCGTGCAGCGCACTCGCTaatcatataaaactagttcataggttaaaacaaaaagttgaagagaATACGGTTAATCCGTCGGATTTTTGTGAAGTCGTTGTGACCAAGTCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGGGAGGTTCCGATCGTACAGGACGGCAAGCCGCTGGTAGACCTGAGCGGCTTTACGTGTCCCATCTGTGGTAAGAAGATGCCCACGCTCATATCGCTCAAGAGACACGTGAACTGGCACACCAACGTCGGCAAAAGTTTGGAGAAGAAGTACGAGTGCTTCGTTTGTAAAGAGTCGTTCGTGTTCCAGCGCCACTACAAGCTGCACATGCGCGCGCACTACACGGACACGTCGCTGGACCCCGCGCACCTCACGTGCAACATCTGCGGCCGCCGCAGCAAGCACCTGCGAGCCGCGCAGGCGCACATGAACTTTCACAAGCAGACGCGCTTCAAGAACAAGGACTACCAGTGCGCCATCTGCGAGCGCGTGTTCCAGCACCGCAAGGTGTACCTGTCGCACATGGCCATCCACTACAAGCGCGGTGATAGCGCGCAGAACACCATCGTGGGCGACATCGACAACAAGCGCGCCGACGCCGCCCACACCTGCCAGCAGTGCGGCAAACTTTGCGACTCCGAGAACTCTCTGAAACACCATCTTATTTGGCACACCTCGAAAACGTTCTTGTACGGCGCTCGCCACGAGTGTCAGATATGTAAAGTAAAGTTCACCAACAAGAGACGCCTAGAAATACACACTAGGACGCACTACGAGGACGAGAACGGCCCCTACAAGTGCACCATCTGCGGGAAGGGGTACACGCACGAGGGCTACTTCAAGAGACACGTCAAGGGACACAATTTCGATAACCAGTCACACAAAAAGAGAATAGAAAATCTGAGAAAAGGCAAAGTGAAGTGTCCGATATGTGCGAGGTTCTACAAGGACTTGGTGAAACTGATCCGTCACCTGCGGCGGACGCACCCCGAGAGCAAAATGATCAAGCAGGACCCTGACGCGCCCCCCGCTGCCTACTTCTCCTGCAAGCTGTGCGCCAAGGTATTCCTTGACGAGCGCAGGCTGCAGGCGCATGAGGAAGCTCATTTGAGAAAACCTGAATTTTTCAAATGCAAGTTCTGCGGAAAGAAAACTATATCGCTGAAAAATCACAGAATACACATAAAGGGTCACCTCACGCAGAAGTACGTGGATAACCCGATCAAGTGTCAGCACTGCGACGAGACGTTCGAGCGCGGCTACGACCTGCACTACCACGTGCGAGACGTGCACGGGTTCGAGGAGAGCTGGATCGCAGAGCGTACCGAGCAGCGGCTGGCCGGCCCGCTGCAGGACCTGCAGTGCTCCATCTGTATGAAGGTGCTGGCCAGCCAGGGTAACTACGAGCGACACCTCGACTACCACAACACGCTGCGCTGCAACTACTGCTTCGACTACTTCAGCTCTCTTCGGTTCCTGGAGGGGCATTTAGCATTTTCATGCGAAAAGAAAAAACTGTTAGGCGACACCGAGATCTATCCGAGAAAGATAAAATGTCACATTTGCTACAAGCCCTTCCACTTGCAAGTCAAGTTGGACTGTCACCTGCGTACACAGCATGGCATCAAGGTGTCCAGGGAGGCACGGTCGGGTAAGAAGGAGATCGTCTGCGACTACTGCTTTAAAGTATTTGAAAACGAATATGCTTTGTCTACACACAAAATTTACCACCGAACCGTGGGCTACTTCGGATGTCTATACTGCAAAAGGAAGTTTAACACGATGACTCTGTACCGTAAACATAAGAACCATCACTTCGCGCAGCTGAACGTGGACGAGCCGACCAAGTGCGAGCACTGCGACGAGACATTCGTAGCGTTCCGGGACATGATCTACCACATGAGGGACGAGCACGGCGACGACAAGGACTGGGTGACGCTGCCCAAGGAGTCCGTGGAGGAGACCTGCAACATCTGCCACAAAACGTTCTTCAACTTGCACAGGCACATGAGCTACCACGAGGAGAACAGGTGTAAAAAGTGCGGCGAATATTTCTTCTCGACCGCGGACTTCGACAACCACTTGTGCGCCATAGAGAGTGACGAGGAAGTGAACAGTAGTATCAACTCCTTTGAGAAACCCAAGTACGAGGAGTGCGATTTCTGCTTCAAACCGACCACGAGGAAGAGTTCGAAGGCCATGCACGAGCATATACATAAAGGATCTGGTTCTATATCGTGCAGGTTTTGTTCACTCAAGTTCAAGACAATGGACGCGTTCAACATTCACGCCTTCTCCCATCGAAGCAGAAAGTATAACAAGAAGCCGATCAAGTGCAGGAAATGTGGCGAGAAGTTCGTTAAGTATGGGCTGTTTATGAAGCACATGAAACTGATACATAAGTCAACGAAGAAGATGCACTACAGGGCGCAGGTGAAGCCGGAGCCGTGCGCAGTATGCGGCGGCCAGTTCCCCAACCTGCACAACCACTACCGCGCGCACGCGCTCAATCAGTGCCAGGCCTGTGGCAAGTATTTCACCTCTTCTAAACTGTTCTCATTTCATGAATGTGATAAAGAGGACTCTGACCCGTCGAAAGTGTTCACCAGTGATGTGAGATTGGATGATTTGATTAACTCGTACGTACCTAAAGATATGAAGGATGACGAGAAATTCTACGGTCACACTGACGATGAAGAAGAGGAGCAGGAAGATGAAACGCTCTCACAAGTGTGCGGCGAGGACGACGAGAGTCAGGACTGTAAAGATACAGATTTCAAAAACATTGATATTGATGAAGATATAACTATGCATCCAATATCCATTCAATCGCCGATTATATCTGACGTGTTGTCACTTTATCAAAAAGAGATGAATCCGGCCGTAGTGGATGACAACGTGGTGAACTTGACAGACGATGACTCTTTAGACGTGGACCACGTGGTGCAGAACCAAGCTGACGCCATTGTGATTATTGACGATGACGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSLQLAEMAMECAKVKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYIPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPLSSVEDKITPTSRRKRSIESEGNTSVGGHSSDYKPSRSKRVEELRNSQKRPRLQSDNTSQPDSDYEDNSGSYVPETDSDEPLLSNTFKCKICDKGFAASKNVAIHIARVHGKKFNNSLGEDAVVDIPKSNSEDAADVEDKLSCDICGKSFKLKIMLKRHHDVCGKTPVKSPQKELLISLEPIDAKQIQTPVVKDPNTCEYCSAKFKQIEGLARHMKSIHAAVLKRDPQPNRKVPVPCLYCNKMFDAYQEHNLHITQCPKLDVNKPFECPVCHRVTSRKMSYCQHVRNMHFEPRVLHVENEVECGPEYHECRMCMKKLSSQEQLIKHLAEHVSNIEEERAAGNVSRASTADDRASVQSVQSNSYPASGPLKCNVCDKEFKYRKALVTHEQKFHTDIPIEVKTEPPDKASTSLLNEKQYRSETESSQEEDDNTCDICEKQFSYRRLLLHHKRTKHHMSSGHKRAKIYLKDCSVRCLICDLEMKVGAINEHNQTHISKNIKPRNLYTCAECEATFKACSALANHIKLVHRLKQKVEENTVNPSDFCEVVVTKSEPLDWIQSHNDFGEVPIVQDGKPLVDLSGFTCPICGKKMPTLISLKRHVNWHTNVGKSLEKKYECFVCKESFVFQRHYKLHMRAHYTDTSLDPAHLTCNICGRRSKHLRAAQAHMNFHKQTRFKNKDYQCAICERVFQHRKVYLSHMAIHYKRGDSAQNTIVGDIDNKRADAAHTCQQCGKLCDSENSLKHHLIWHTSKTFLYGARHECQICKVKFTNKRRLEIHTRTHYEDENGPYKCTICGKGYTHEGYFKRHVKGHNFDNQSHKKRIENLRKGKVKCPICARFYKDLVKLIRHLRRTHPESKMIKQDPDAPPAAYFSCKLCAKVFLDERRLQAHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYVDNPIKCQHCDETFERGYDLHYHVRDVHGFEESWIAERTEQRLAGPLQDLQCSICMKVLASQGNYERHLDYHNTLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEIYPRKIKCHICYKPFHLQVKLDCHLRTQHGIKVSREARSGKKEIVCDYCFKVFENEYALSTHKIYHRTVGYFGCLYCKRKFNTMTLYRKHKNHHFAQLNVDEPTKCEHCDETFVAFRDMIYHMRDEHGDDKDWVTLPKESVEETCNICHKTFFNLHRHMSYHEENRCKKCGEYFFSTADFDNHLCAIESDEEVNSSINSFEKPKYEECDFCFKPTTRKSSKAMHEHIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGLFMKHMKLIHKSTKKMHYRAQVKPEPCAVCGGQFPNLHNHYRAHALNQCQACGKYFTSSKLFSFHECDKEDSDPSKVFTSDVRLDDLINSYVPKDMKDDEKFYGHTDDEEEEQEDETLSQVCGEDDESQDCKDTDFKNIDIDEDITMHPISIQSPIISDVLSLYQKEMNPAVVDDNVVNLTDDDSLDVDHVVQNQADAIVIIDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502316;
- 90% Identity
- -
- 80% Identity
- -