Mpha022537.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monomorium pharaonis
Gene Symbol
bab1
Assembly
GCA_013373865.1
Location
CM023797.1:768534-794910[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.1e-17 2.4e-14 53.5 0.0 1 43 100 143 100 145 0.95
2 2 6.4 7.4e+03 -2.4 1.8 6 15 223 232 221 234 0.88

Sequence Information

Coding Sequence
ATGAGCCAACTTTGCGTGTGTCTTGCGCTTTCGAAGGCGTCCCGCGTCTCGCGAAACCCCCTTCAGAAGCCTCGCATATTAGCAAAGTTGTTGGCCGAGGTGAGCAGTTCGGATTACCTCGCATTTCAAGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGCGCCTCCACCTCCAGTATAGCAGCAGACAGCTACCAGTACCAACTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAATCTGCGCTTTCGCGAACGTGGACCCCTCAAATCCTGGCGGCCGGAGACCATGGCGGAGGCGATCTTCAGCGTGCTGAAGGAAGGGCTCTCCCTCAGCCAAGCGGCAAgGAAATACGATATCCCCTACCCGACGTTCGTCCTGTACGCGAATCGAGTGCACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATCTGCGTCCGAAAGGACGAGGACGGCCGCAGAGGATCCTGCTGGGTGTCTGGCCGGACGAGCACATCCGCGGCGTGATTCGCGCGGTCGTGTTCCGCGACGGGCACTCGCCCCACATCGTCAAGGAGGAGCCGACCACGATGTACCCCAGCTTGGCCAGCTATGCCGCCTGCAACGGCCCGGAAGGCGCGGTCAGCCCGGGTGCGGCGGCCGCGGCTGCGGTCGCGGCGGTCGCTCAAGGTCTGCGGCACCAGATGTGCAGTATGGTGGCAGCGGCGCACTCGCAGCAACACGACATGATGGCGACGAATCTGTCAACGAGCCTGTCCACCAGCCTGTCGTCGAATCTGCAGGCGGCGATGCAGGCCAGTCAGCAtcacaacaacaacaacaacacgAGCAACAGCGGCCTCGGCGGCGGCAACGGCGCCGGCAACAATACCGGCAACTCCCCGTTGAATCTCGGCCTGGCGAGCCCGGGCTCGGGCGGGCCACCCGAGAGCCCGCTGGAGAGTCCTCTGGCGAGCCCGCTGGGCCCGCTGATGGACCCGGCGGGTCACATACCCAGCAGCGTGGAGGTCGGCATCGGCGTGAGCGGTATGACGTACAAGCCGGCGCGGAGCTTCGTCAGCCCGCGCCCGGAGAATCTCTTCCAGGAGGACATCGCCGATCTGGTGAAGAGTCCTCACGGTCTCAAGGACAAGGACAAGATCCCGGTGAAGCTCGAGCCGCTCACGGACTCGCGCTGCGAATAG
Protein Sequence
MSQLCVCLALSKASRVSRNPLQKPRILAKLLAEVSSSDYLAFQAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLASYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTSLSTSLSSNLQAAMQASQHHNNNNNTSNSGLGGGNGAGNNTGNSPLNLGLASPGSGGPPESPLESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01261764; iTF_00417479; iTF_00181230; iTF_01422834; iTF_00014643; iTF_00016608; iTF_00127361; iTF_00125826; iTF_00128102; iTF_00129644; iTF_00128881; iTF_00126617; iTF_00866625; iTF_01255458; iTF_01390114; iTF_01422146; iTF_01498114; iTF_00360131; iTF_00963107; iTF_00964387; iTF_00961743; iTF_00675940; iTF_00865924; iTF_01423556; iTF_01065477; iTF_01391877; iTF_00385190; iTF_00762470; iTF_01070278; iTF_01068203; iTF_01066162; iTF_01405606; iTF_01070952; iTF_01406408; iTF_00625417; iTF_01228297; iTF_01268938; iTF_01267466; iTF_01271114; iTF_00769547; iTF_00868683; iTF_00391212; iTF_00393516; iTF_01269708; iTF_00633549; iTF_01066861; iTF_01067533; iTF_00867310; iTF_00979983; iTF_01523280; iTF_00182546; iTF_00765459; iTF_01408083; iTF_01407157; iTF_00183862; iTF_00183205; iTF_01268182; iTF_00962424; iTF_00963777; iTF_01421464; iTF_01089913; iTF_01408985; iTF_00306170; iTF_00861050; iTF_00024539; iTF_01068892; iTF_00868029; iTF_00117918; iTF_01389343; iTF_00884992; iTF_01391008; iTF_00060105; iTF_01414082; iTF_01412232; iTF_01411403; iTF_00719317; iTF_01303228; iTF_01200061; iTF_00938590; iTF_01130728; iTF_00770289; iTF_01198584; iTF_01199322; iTF_00939445; iTF_01048824; iTF_00718457; iTF_01048154; iTF_01245137; iTF_00879538; iTF_00881153; iTF_00882863; iTF_00881916; iTF_00302947; iTF_00217668; iTF_01395044; iTF_00880363; iTF_01453995; iTF_00738252; iTF_00684718; iTF_00252730; iTF_00254996; iTF_00229947; iTF_00254236; iTF_00251985; iTF_01169086; iTF_00729212; iTF_00730651; iTF_00264190;
90% Identity
iTF_01261764;
80% Identity
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