Psmy001586.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- bab1
- Assembly
- GCA_030142225.1
- Location
- JARQST010000090.1:452298-454359[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-17 1.1e-14 54.0 0.0 1 43 28 71 28 73 0.95 2 3 2.5 2.5e+03 -1.5 1.4 6 15 153 162 151 165 0.88 3 3 8 8.1e+03 -3.2 0.1 3 11 192 200 192 200 0.82
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGTTGGAACACCAATCAGAGTCTGGTGCACAATCTACGCTTCCGGGAACGCGGACCGCTCAAGTCTTGGCGACCGGAAACCATGGCCGAGGCAATCTTCAGCGTTCTCAAGGAAGGACTTTCGCTCAGCCAAGCAGCAAGGAAATACGACATACCCTACCCAACGTTTGTCCTTTATGCGAATCGAGTTCACAACATGCTAGGTCCAAGCGCCGATGGCGGGGCCGGTGAGTATCTACGTCCCAAAGGCAGAGGGCGACCTCAGCGAATACTTCTTGGAGTCTGGCCGGACGAGCACATCCGCGGTGTCATAAGGGCGGTTGTCTTTCGTGATGGACACTCGCAGCACATTGTCAAGGAGGAGCCAACCTCCATGTATCCCAGTCTTGCGAATTACGCAGCCTGCAATGGACCAGAGGGTGCAGTGAGTCCTGGGGCAGCGGCGGCAGCAGCGGTCGCAGCAGTGGCACAAGGTCTCCGACATCAGATGTGCAGCATGGTGGCTGCAGCTCATTCCCAGCAGCACGACATGATCGGTACGAATCTCTCCAGCAGCCTTTCGACGAACATCCAGGCGGCAATTCAGGCTCAGCATCatcacaacaacaacaacaataacaataacgggAACTCGCCGCTCAATTTGGGCCTGGCGAGTCCCGGCTCGGGTGGTCCGCCTGAGAGTCCCATGGAAAGTCCCCTGGCGAGTCCTCTGGGTCCTCTGATGGATCCCACGCACATACCCAGCAGCGTGGAGGTTGGCATAGGTGTCAGCGGGATGACTTACAAGCCGGCGCGCAGCTTCGTCAGTCCCAGACCGGAGAATCTCTTCCAAGAGGACATCGCTGACCTGGTCAAGAGTCCTCATAGCCTCAAGGACAAGGACAAGATACCTGTGAAGTTGGAACCGCTTACGGACTCGCGTTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSQHIVKEEPTSMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMIGTNLSSSLSTNIQAAIQAQHHHNNNNNNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPTHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHSLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00253480;
- 80% Identity
- -