Pare005750.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- bab1
- Assembly
- GCA_017607525.1
- Location
- JAANIA010002359.1:863050-870634[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-18 5.4e-15 53.9 0.0 1 43 28 71 28 73 0.95 2 2 1 1.2e+03 -1.6 1.4 6 15 151 160 149 163 0.88
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAACCAGAGTCTGGTGCACAATCTGCGCTTCCGGGAACGTGGACCCCTCAAGTCTTGGCGGCCAGAGACTATGGCGGAGGCGATCTTCAGCGTACTCAAGGAAGGACTCTCCCTCAGCCAAGCGGCAAGGAAATACGATATCCCTTACCCGACGTTTGTCCTGTACGCGAATCGAGTACACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATTTGCGCCCGAAGGGACGAGGACGACCGCAGAGGATTCTGCTGGGTGTATGGCCAGACGAGCATATCCGCGGTGTGATTCGCGCGGTGGTATTCCGCGACGGACACTCGCCACACATCGTCAAGGAGGAGCCGACCACGATGTACCCTAGCCTGGCGAACTACGCGGCTTGCAATGGCCCGGAAGGCGCAGTCAGTCCGGGTGCGGCAGCTGCGGCTGCGGTCGCGGCGGTCGCTCAAGGTCTGCGACACCAAATGTGCAGCATGGTGGCAGCGGCGCATTCGCAGCAACACGATATGATGGCGACGAACCTGTCGACGAGTCTGTCTACCAGTCTGTCGTCAAATCTACAAGCGGCGATGCAAGCTAGCCAGCAccacaacaacaacaacacgAGCAGCAACGCGAGTGGCCTCGGCAGCAGCAATAGCGCCGGCAACAACGGCAATTCGCCATTGAATCTCGGCCTGGCGAGCCCGGGTTCGGGTGGACCGCCCGAGAGTCCGTTGGAGAGTCCCCTGGCGAGCCCGTTGGGTCCGCTGATGGATCCAGCGGGCCACATACCCAGTAGCGTGGAAGTCGGCATCGGTGTGAGCGGCATGACGTACAAGCCGGCACGGAGCTTTGTCAGTCCACGCCCGGAGAATCTCTTCCAGGAGGACATCGCCGATCTGGTGAAGAGCCCCCACGGTCTTAAAGACAAGGACAAGATCCCGGTGAAGCTTGAACCACTCACGGACTCGCGCTGCGAA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTSLSTSLSSNLQAAMQASQHHNNNNTSSNASGLGSSNSAGNNGNSPLNLGLASPGSGGPPESPLESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00014643; iTF_00016608; iTF_00127361; iTF_00125826; iTF_00128102; iTF_00129644; iTF_00128881; iTF_00126617; iTF_01255458; iTF_01422146; iTF_01015716; iTF_00385190; iTF_01405606; iTF_00417479; iTF_01406408; iTF_01228297; iTF_00868683; iTF_00868029; iTF_00867310; iTF_00738252; iTF_00181230; iTF_00182546; iTF_01523280; iTF_01245137; iTF_01422834; iTF_00765459; iTF_00884992; iTF_01408083; iTF_01407157; iTF_01268182; iTF_01421464; iTF_01423556; iTF_01408985; iTF_00730651; iTF_00729212; iTF_00264190;
- 80% Identity
- iTF_00014643; iTF_00016608;