Npin004930.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- bab1
- Assembly
- GCA_021155775.2
- Location
- CM037741.1:1581008-1584421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-18 1.8e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 3 2.3 4.9e+03 -1.8 1.2 6 15 151 160 148 161 0.85 3 3 8 1.7e+04 -3.5 0.1 3 11 190 198 190 198 0.82
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACGAATCAGAGTCTGGTCCACAATCTTCGGTTCAGAGAACGCGGACCCCTCAAGTCCTGGAGGCCAGAGACGATGGCCGAGGCCATTTTCAGCGTCCTCAAGGAGGGCCTCTCGCTGAGCCAGGCGGCAAGAAAATACGACATCCCGTATCCGACGTTCGTCCTCTATGCGAACCGCGTTCACAACATGTTGGGACCGAGCGCGGACGGCGGAGCCGATCTCCGACCCAAGGGCCGCGGGAGGCCTCAGCGCATTCTTCTCGGCGTTTGGCCGGACGAGCACATAAGAGGAGTGATTAGAGCCGTCGTCTTCCGCGATGGACAGTCCGCCCACATCGTCAAGGAGGAGCCAACCACGTTGTACCCGAGCCTCGCCAGCTACGCCGCGTGCAACGGTCCCGAGGGTGCCGTCAGCCCTGGAGCTGCAGTTTCCGCTGCCGTGGCCGCCGTTGCCCAAGGTTTGCGTCATCAGGTTTGCAGTATGGTGGCAGCGGCTCATTCCCAACAGCACGACATGATCGGCACCAACCTGTCGTCGAATTTGTCGACCAACATTCAGGCAGCGCTGCAAGCACAGCATCAGAACAATGGCAACTCACCGCTTAACCTCGGATTGGCGAGTCCGGGTTCCGGACCGCCGGAAAGTCCGATGGAGAGCCCGCTGGCGAGTCCGTTGGGTCCGCTAATGGACCCGGGACATATCCCAGGCAGCGTCGAGGTCGGAATTGGGGTCAGCGGGATGACGTACAAGCCGACTCGCAGTTTCGTTAGTCCAAGACCGGAGAACCTCTTCCAGGAGGATATCGCGGACCTGGTGAAGAGTCCCCATCACACCTTGAAGGACAAGGACAAAATACCGGTGAAACTGGAGCCTCTCCAGGCAGATTCTAGGTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGQSAHIVKEEPTTLYPSLASYAACNGPEGAVSPGAAVSAAVAAVAQGLRHQVCSMVAAAHSQQHDMIGTNLSSNLSTNIQAALQAQHQNNGNSPLNLGLASPGSGPPESPMESPLASPLGPLMDPGHIPGSVEVGIGVSGMTYKPTRSFVSPRPENLFQEDIADLVKSPHHTLKDKDKIPVKLEPLQADSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00939445;
- 80% Identity
- -