Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.2e-18 5.7e-15 54.1 0.0 1 43 28 71 28 73 0.95

2 3 1.2 1.6e+03 -1.8 1.2 6 15 153 162 150 163 0.85

3 3 4.1 5.4e+03 -3.5 0.1 3 11 192 200 192 200 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.2e-18	5.7e-15	54.1	0.0	1	43	28	71	28	73	0.95
2	3	1.2	1.6e+03	-1.8	1.2	6	15	153	162	150	163	0.85
3	3	4.1	5.4e+03	-3.5	0.1	3	11	192	200	192	200	0.82

Coding Sequence: ATGTGGCAGAAGTGCTGGAACACGAATCAGAGTCTGGTCCACAATCTTCGGTTCAGAGAACGCGGACCCCTCAAGTCCTGGAGGCCAGAGACGATGGCCGAGGCCATTTTCAGCGTCCTCAAGGAGGGCCTCTCGCTGAGCCAGGCGGCAAGAAAATACGACATCCCGTATCCGACGTTCGTCCTCTATGCGAACCGCGTTCACAACATGTTGGGACCGAGCGCGGACGGCGGAGCCGGTGAGTATCTCCGACCCAAGGGCCGCGGGAGGCCTCAGCGCATTCTTCTCGGCGTTTGGCCGGACGAGCACATAAGAGGAGTGATTAGAGCCGTCGTCTTCCGCGATGGACAGTCCGCCCACATCGTCAAGGAGGAGCCAACCACGTTGTACCCGAGCCTCGCCAGCTACGCCGCGTGCAACGGTCCCGAGGGTGCCGTCAGCCCTGGAGCTGCAGTTTCCGCTGCCGTGGCCGCCGTTGCCCAAGGTTTGCGTCACCAGGTTTGCAGTATGGTGGCAGCGGCTCATTCCCAACAGCACGACATGATCGGCACCAACCTGTCGTCGAATTTGTCGACCAACATTCAGGCAGCGCTGCAAGCACAGCATCAGAACAATGGCAACTCACCGCTTAACCTCGGATTGGCGAGTCCGGGTTCCGGACCGCCGGAAAGTCCGATGGAGAGTCCGCTGGCGAGTCCGTTGGGTCCGCTAATGGACCCGGGACATATCCCAGGCAGCGTCGAGGTCGGAATTGGGGTCAGCGGGATGACGTACAAGCCGACTCGCAGTTTCGTTAGTCCAAGACCGGAGAACCTCTTCCAGGAGGATATCGCGGACCTGGTGAAGAGTCCCCATCACACCTTGAAGGACAAGGACAAAATACCGGTGAAACTGGAGCCTCTCCAGGCAGATTCTAGGTGCGAATAG
Protein Sequence: MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGQSAHIVKEEPTTLYPSLASYAACNGPEGAVSPGAAVSAAVAAVAQGLRHQVCSMVAAAHSQQHDMIGTNLSSNLSTNIQAALQAQHQNNGNSPLNLGLASPGSGPPESPMESPLASPLGPLMDPGHIPGSVEVGIGVSGMTYKPTRSFVSPRPENLFQEDIADLVKSPHHTLKDKDKIPVKLEPLQADSRCE

Sequence clustering based on sequence similarity using MMseqs2