Ccol005188.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- bab1
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000078.1:18158032-18161790[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-18 2e-14 53.8 0.0 1 43 28 71 28 73 0.95 2 2 1.4 4.1e+03 -1.6 1.0 6 15 153 162 153 164 0.89
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACCAATCAGAGCCTGGTGCACAATCTACGCTTCCGGGAACGCGGGCCCCTCAAATCCTGGCGACCGGAAACGATGGCGGAGGCGATCTTCAGCGTCCTTAAAGAGGGACTGTCCTTGAGCCAAGCCGCAAGGAAATACGACATCCCGTACCCGACGTTCGTTCTCTATGCTAATCGAGTGCACAACATGCTGGGTCCGAGCGCCGACGGCGGGGCCGGTGAGTATCTTCGCCCGAAGGGAAGAGGCAGGCCGCAGAGGATTCTACTAGGTGTCTGGCCCGACGAGCACATCCGCGGAGTGATTCGAGCAGTGGTGTTCCGCGATGGTCACTCTCCGCACATCGTCAAGGAAGAACCAACCTCCATGTACCCGAGTTTGGCGAATTACGCGGCTTGTAACGGACCGGAAGGTGCGGTCAGCCCCGGAGCCGTGACCGCGGCCGCGGTTGCCGCGGTCGCTCAAGGTCTGCGGCATCAGATGTGCAGCATGGTAGCGGCGGCGCATTCGCAGCAGCACGACATGATGGCGACGAACCTGTCGACGAATCTCTCGGCGAACCTGTCGACCAGCCTCTCGTCGAACCTGCAAGCGGCGATGCAGGCCAGCCAGCACCAccacaacagcaacaacagcggTGCCGGTATTATCGGTAGCAACAACGGCAGCGGAGGCGTGGGCGTCGGCGTGGGCGTCGGTGGCGGCGGTAACAACGGTAACTCGCCGTTGAATCTGGGTCTGGCCAGTCCAGGGTCCGGCGGTCCGCCGGAGAGCCCGATGGAGAGTCCGTTGGCGAGTCCGCTGGGCCCTCTGATGGACCCGGGTCACATACCGAGCAGCGTGGAGGTCGGAATCGGCGTCAGCGGAATGACCTACAAGCCGACGCGGAGCTTCGTGAGCCCGCGGCCCGAGAATCTCTTCCAGGAGGACATCGCGGACCTCGTCAAGAGTCCCCACGGACTCAAGGACAAAGACAAGATACCGGTGAAGCTGGAGCCGCTAACCGACTCCCGCTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTSMYPSLANYAACNGPEGAVSPGAVTAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTNLSANLSTSLSSNLQAAMQASQHHHNSNNSGAGIIGSNNGSGGVGVGVGVGGGGNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPGHIPSSVEVGIGVSGMTYKPTRSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00117918;
- 80% Identity
- -