Cpal001794.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- bab1
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000113.1:330591-332700[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-17 1.1e-14 54.0 0.0 1 43 28 71 28 73 0.95 2 3 1.5 1.5e+03 -0.8 0.9 6 15 153 162 150 165 0.86 3 3 8.1 8.4e+03 -3.2 0.1 3 11 192 200 192 200 0.82
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGTTGGAACACCAATCAGAGCCTGGTCCACAATCTTCGCTTCCGGGAACGCGGACCTCTCAAGTCTTGGCGACCGGAAACCATGGCCGAGGCAATCTTCAGCGTCCTCAAGGAAGGACTTTCGCTCAGCCAAGCAGCAAGGAAATACGACATACCGTACCCAACGTTTGTCCTTTACGCAAATCGAGTTCACAACATGTTAGGTCCAAGCGCCGATGGCGGGGCCGGTGAGTATCTGCGTCCCAAGGGCCGAGGGCGACCTCAGCGAATACTCCTTGGGGTCTGGCCGGACGAGCACATCCGCGGTGTGATAAGAGCGGTTGTCTTCCGCGACGGACACTCGCCGCACATCGTCAAGGAGGAGCCAGCCTCCATGTATCCGAGTCTTGCGAATTACGCAGCCTGCAATGGACCGGAAGGAGCGGTGAGTCCAGGAACGGCAGCGGCAGCCGCGGTCGCGGCAGTGGCCCAAGGGCTCCGACATCAGATGTGCAGCATGGTGGCTGCGGCTCATTCCCACCAGCACGACATGATCGGTACGAATCTCTCCAGCAGCCTGTCGACGAACATCCAGGCGGCAATTCAGGCCCAGCATCatcacaacaacaacaacaacaacaataataacaatgggAATTCGCCGCTCAATTTGGGCCTGGCGAGTCCTGGGTCGGGTGGTCCACCCGAGAGTCCCATGGAGAGTCCCCTGGCGAGTCCTCTGGGTCCTCTGATGGATCCGACCCACATACCCAGCAGCGTGGAGGTCGGCATCGGCGTCAGCGGGATGACCTACAAGCCGGCGCGCAGCTTCGTCAGTCCCAGACCGGAGAATCTCTTCCAGGAGGACATCGCCGACCTCGTGAAGAGTTCTCACGGGCTCAAGGACAAGGACAAGATACCTGTCAAGTTGGAGCCGCTGACGGACTCGCGTTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPASMYPSLANYAACNGPEGAVSPGTAAAAAVAAVAQGLRHQMCSMVAAAHSHQHDMIGTNLSSSLSTNIQAAIQAQHHHNNNNNNNNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPTHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSSHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00253480;
- 80% Identity
- iTF_00251985;