Atex005622.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- bab1
- Assembly
- GCA_004480015.1
- Location
- QEPB01037450.1:4852-12477[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-18 1.6e-14 53.8 0.0 1 43 42 85 42 87 0.95 2 2 1.1 3.5e+03 -1.7 1.4 6 15 165 174 163 177 0.88
Sequence Information
- Coding Sequence
- ATGTTAGACGAGCCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGTCTGGTGCACAATCTGCGCTTCCGGGAACGTGGACCCCTCAAGTCTTGGCGGCCAGAGACTATGGCGGAGGCGATCTTCAGCGTACTGAAGGAAGGACTCTCCCTCAGCCAAGCGGCAAGGAAATACGATATCCCCTACCCGACGTTTGTCCTGTACGCGAATCGAGTACACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATTTGCGCCCGAAGGGACGAGGACGACCACAGAGGATTCTGTTGGGTGTCTGGCCAGACGAGCATATCCGCGGTGTGATTCGCGCGGTGGTATTCCGCGACGGGCACTCGCCACACATCGTCAAGGAGGAGCCGACCACGATGTACCCCAGCCTGGCGAACTACGCGGCTTGCAATGGCCCGGAAGGCGCAGTCAGTCCGGGTGCGGCAGCTGCGGCTGCGGTCGCGGCGGTCGCTCAAGGTCTGCGACACCAAATGTGCAGCATGGTGGCAGCGGCGCATTCGCAGCAACACGATATGATGGCGACGAACCTGTCGACGAGTCTGTCTACCAGTCTGTCGTCAAACCTACAAGCGGCGATGCAAGCTAGCCAGCACCATAACAACAATAACACGAGCAGCAACGCAAGTGGCCTCGGCAGCAGCAATAGCGCCGGCAACAACAACGGCAATTCACCATTGAATCTCGGTCTGGCGAGCCCGGGCTCGGGTGGACCGCCCGAGAGTCCGTTGGAGAGTCCCCTGGCGAGCCCGTTGGGTCCGCTAATGGATCCAGCGGGTCACATACCCAGTAGCGTGGAAGTTGGCATCGGCGTGAGCGGCATGACGTACAAGCCGGCACGGAGCTTTGTCAGTCCACGCCCGGAGAATCTCTTCCAGGAGGACATCGCCGATCTGGTGAAGAGCCCCCACGGTCTTAAGGACAAGGACAAGATCCCGGTGAAGCTTGAACCGCTCACGGACTCGCGCTGCGAATAG
- Protein Sequence
- MLDEPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTSLSTSLSSNLQAAMQASQHHNNNNTSSNASGLGSSNSAGNNNGNSPLNLGLASPGSGGPPESPLESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_01261764;
- 80% Identity
- -