Pate019416.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- bab1
- Assembly
- GCA_963170745.1
- Location
- OY720669.1:8290845-8294741[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-17 1.3e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 3 2.5 2.9e+03 -1.5 1.4 6 15 153 162 151 165 0.88 3 3 1.5 1.7e+03 -0.8 0.0 3 13 192 202 190 206 0.79
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACCAATCAGAGCCTGGTCCATAATCTCAGATTCCGGGAGCGTGGGCCCCTGAAATCCTGGAGGCCCGAAACTATGGCTGAAGCTATTTTCAGCGTCCTCAAGGAAGGTCTTTCCCTCAGCCAAGCTGCTAGGAAATACGACATCCCATATCCAACGTTTGTTCTATACGCAAATCGGGTGCATAATATGTTGGGCCCCAGCGCGGACGGCGGAGCCGGTGAGTaTCTTCGGCCTAAGGGTCGCGGTAGACCGCAAAGAATTCTTCTCGGCGTTTGGCCGGACGAACACATCAGAGGTGTTATAAGAGCCGTTGTATTTCGGGATGGACAATCCGCGCACATCGTCAAAGAAGAACCAGCCTCTATGTACCCTAGCCTTGCCAGTTATGCTGCCTGCAATGGTCCCGAAGGTGCCGTGAGTCCCGGCGCCGCTGCGGCTGCTGCAGTAGCCGCCGTCGCACAGGGTCTGAGACATCAAATGTGTAGCATAGTAGCAGCGGCGCATTCGCAGCAGCACGACATGATAGGCACAAACCTATCAGGAAATTTGTCAACGAATATACAAGCAGCTATACAAGCACAACAGAACAACGGAAATTCGCCATTAAATTTAGGACTTGGTAGTCCCGGTTCAGGGCCCCCGGAGAGTCCGATGGAAAGTCCTCTGGCAAGTCCGTTGGGTCCTCTAATGGATCCAGCTCACATACCGGGAAACGTTGAACTTGGAATCGGCGTTAGCGGTATGACGTACAAACCGGCTCGCAGTTTCGTTAGTCCTAGGCCAGAGAATCTGTTTCAAGAAGATATCGCCGATTTGGTCAAAAGTCCCCACGGTTTGAAAGACAAGGATAAAATACCCGTCAAGCTTGAACCTCTACAAGCAGACTCAAGGTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGQSAHIVKEEPASMYPSLASYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSIVAAAHSQQHDMIGTNLSGNLSTNIQAAIQAQQNNGNSPLNLGLGSPGSGPPESPMESPLASPLGPLMDPAHIPGNVELGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLQADSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015716;
- 90% Identity
- iTF_00939445;
- 80% Identity
- -