Lhal011012.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000026.1:3716572-3731728[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-71 1.3e-67 228.4 18.0 1 263 124 374 124 399 0.88 2 2 2 2e+04 -6.6 13.4 1 45 401 447 399 474 0.47
Sequence Information
- Coding Sequence
- ATGATGGGGCACCGCTCAGAAATGGCTACGCCTGATAACAGCGATGAGGAAAGCGGAGACGCCTTCACCGATGGAGACTTCGGCGACTCTGATGATGAAACGGTCCTGGAGCGTGACGATAACAATCCCTCAAATGTTCCTATCAATGAAACCGTCAATACAGAAGTTCAACAAAAGCTTACAAATGGTAACTCCCATAGTAATGGCTATGGAGAGCCTTCCGAGGAACCAAAAGTTAACGGACGCGTAAACAGTGAACCACAATTAAGTGACCTCGAAAACTGTAGTGACATAGGCGATGTGCGACGGGATTCCCATGGCGATCAAAATCCTTCGATTGTCGGAATTATTGGAGATCAGCACAGTCATGCGGAGCAGCGGCTGGCAGCGCGGCGCGCGGCTCGGGCGGAGGCGCGTGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGAACAATGCAGACAAGGCGTATGACATGTACGCAGAGACGGTGGGCAGGCGAGGCCCTCGGCTGGCGGCGCTCAGCCCGGCCGCGACGCTCTCGCCGCGGCGCAGTTCAGAGGACTCGGCGGACGACACGTTCAGCATCAAGGACTTGAGGCATGAGTTGAAAGAAGTGGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAACTCGACAACGACAAGGCGTCGCTCGGCTACCAGCTCGAACTGCTCAAGGACAGGATTGACGAGCTGCACGAGGAACACGCACAGTTGCAGCGGGAGCACAGAGAGAAGTGTTCAGTGTACGAGCGGCTAAAGCGCGAGCACGTGTGCGTCGCCCGCGAGCTGGCGGCGGCGCGCGACGCGATCCTGGCGCGCGAGGCCGCCGCCGCCGCCGCCGGGTTCGTGTTCGCGGACGCGCCGCCCGGCGCCAGCGCCGAGGGCTTCGGGGACGTGCCGCCGCTCGCGCTGCTCTCGCAGGAGGCCGACCGCCAGCTGGGCGACGCGGAGGCCACGCTCGACGTGCGGTTGCAGGGCCTGGTGAGTGCGAAGCTGTCTCTGGAGTCGGAGGTGCGCAAGCTTAAGCTGCAGCTCAACGAGGAGCGCGCCGCGCGCCAGAACGGCGTCGCCGCGCACCACGACCGGGAGTACGACAACGAACTGGAGTCGCTGCGCAAGGCGGCGCTGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCCGCGCTGCAGGCGGCGGGCTGCGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGCGAGGGCGAGCACGCCGACCACGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGAGAGAGGCCCGAGAGGCGCTAAACCGAGTAGAAGAGTTGGAGACCGAGAACAACCACCTCACCAAGAGACTCGACAAGCTGAAGCACGCCAAATCCGCCCTACTCAAGGACCTGTGA
- Protein Sequence
- MMGHRSEMATPDNSDEESGDAFTDGDFGDSDDETVLERDDNNPSNVPINETVNTEVQQKLTNGNSHSNGYGEPSEEPKVNGRVNSEPQLSDLENCSDIGDVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYAETVGRRGPRLAALSPAATLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELHEEHAQLQREHREKCSVYERLKREHVCVARELAAARDAILAREAAAAAAGFVFADAPPGASAEGFGDVPPLALLSQEADRQLGDAEATLDVRLQGLVSAKLSLESEVRKLKLQLNEERAARQNGVAAHHDREYDNELESLRKAALEAKGRAARAEAEAALQAAGCARLEAQLQRLRAREGEHADHEEQLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKHAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182914; iTF_00377125; iTF_00856645; iTF_00632772; iTF_00737498; iTF_01171487; iTF_01170617; iTF_01161392; iTF_00663096; iTF_00267201; iTF_01335954; iTF_00119615; iTF_00318111; iTF_00662240; iTF_00661298; iTF_01528310; iTF_01529209;
- 90% Identity
- -
- 80% Identity
- -