Ader012031.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947579855.1
- Location
- OX388260.1:1553045-1566743[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-72 1.4e-67 228.2 19.9 1 271 124 382 124 404 0.86 2 2 0.85 1.7e+04 -5.1 9.6 129 165 429 469 411 479 0.49
Sequence Information
- Coding Sequence
- ATGGGGCGTCGTTCAGAAATGGCTACGCCTGATAACAGCGATGACGAGAGTGGAGAGGCCTTCACCGACGGTGACTTCGGTGACTCTGATGATGGAATTGTTTTGGAACGCGATGAAAGCAAACCCTCTAACATCCCCGTCAACGAAACGATCAATGTAGAAGTTCAGCAAGAGCTAACCAACGGTAGCTCTCATAGTAATGGGTACGAGAAGCTTCCTGAGGAGCCACAAGTTAACGGTCAGAGCAACAGTGAACATCAAACTAGTGATGTAGAAATCGGTAGTGGCATAGCAGCAGATGTAAGACGGGATTCACACGGTGACCAAAACCCTTCGATTGTTGGAATTATTGGGGACCAGCACAGTCATGCGGAGCAGCGTCTAGCGGCGCGGCGGGCGGCGCGGGCCGAGGCGAGGGAGATCCGCATGAGGGAGCTGGAGAGGCAGCAGAGGGAACAAGAGGACCATGCGGACAAGGCGTATGACATGTACGCAGAGACAGTTGGCAGAAGGGGCCCTCGACTTGCGGCACTGAGTCCAGCCGCGGTGCTGTCGCCGCGGCGAAGTTCAGAAGATTCTGCGGATGACACCTTCAGCGTCAAAGACTTAAGGCATGAACTGAAGGAGGTGGAGGAGAAGTTCCGCAAAGCGATGATTCTGAACGCGCAGCTGGACAACGACAAGGCCTCGCTCGGGTACCAGCTGGAACTGTTAAAGGACAGGATCGAAGAGCTCCAGGAGGAATACGCACAACTACAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGCGGCGCGAACACGCGTGCGTGGAGCGCGAGCTGTGCGGTGCGCGGGACGCGGTGCGCGCGCGCGACGCGGCGGCGCGCGACGCGGGCTTCCTGTTCGCGGAGGCGCCGCCGCTCGCGCACGCGCAGGGCTTCGGCGACGTGCCGCCGCTCGCGCTCATCTCGCACGAGACCGACCTGATGCTCGGCGATGGAGAGGCCACCCTAGACGTGCGATTGCAAAATCTGGTGACCGCAAAGCAGTCCCTGGAATCGGAAGTGCGCAAACTGAAGCTGACGCTGAACGAGGAACGCGCTGCTAGACAAAATGGCGTCGCCAACCACCACGACGAGCTCTATGAAAATGAACTGGAGACGCTGCGGCGCGTGGCGGGGGAGGCGAAGGCGCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGCGGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCATCGACGACCACGACGGCCTCGAGGAGCAGCTCAAGCAGGACCGCAGGAAGCTGCAGCGCGAGGCGCGAGAGGCACTCAACCGGGTGGAAGAGTTGGAGACGGAGAACAGCCACCTCACCAAGAGACTCGATAAGCTCAAGAACGCCAAATCCGCACTGCTCAAGGACCTGTGA
- Protein Sequence
- MGRRSEMATPDNSDDESGEAFTDGDFGDSDDGIVLERDESKPSNIPVNETINVEVQQELTNGSSHSNGYEKLPEEPQVNGQSNSEHQTSDVEIGSGIAADVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSVKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIEELQEEYAQLQREHREKCSAHERLRREHACVERELCGARDAVRARDAAARDAGFLFAEAPPLAHAQGFGDVPPLALISHETDLMLGDGEATLDVRLQNLVTAKQSLESEVRKLKLTLNEERAARQNGVANHHDELYENELETLRRVAGEAKARAARAEAEAALQAAAAARLEAQLQRLRARIDDHDGLEEQLKQDRRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -